PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g05790.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 543aa    MW: 59900.9 Da    PI: 10.4312
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g05790.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.81.4e-14190237148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g WT+eEd +lv     +G  +W+++++  g+ R++k+c++rw +yl
  Zjn_sc00007.1.g05790.1.am.mk 190 KGTWTAEEDHKLVTFLLSHGHCCWRLVPKLAGLLRCGKSCRLRWTNYL 237
                                   799*****************************99************97 PP
2Myb_DNA-binding52.98.4e-17246287447
                                   S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
               Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                    + eE+ l +d+++qlG++ W++Ia++++ gRt++++k++w+++
  Zjn_sc00007.1.g05790.1.am.mk 246 LSDEEEALVIDLHAQLGNR-WSKIAARIP-GRTDNEIKNHWNTH 287
                                   589****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-19181238IPR009057Homeodomain-like
PROSITE profilePS5129414.095185237IPR017930Myb domain
SuperFamilySSF466891.96E-25187284IPR009057Homeodomain-like
SMARTSM007179.2E-11189239IPR001005SANT/Myb domain
PfamPF002493.0E-13190237IPR001005SANT/Myb domain
CDDcd001672.13E-8192237No hitNo description
PROSITE profilePS5129427.435238292IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-24239292IPR009057Homeodomain-like
SMARTSM007172.5E-15242290IPR001005SANT/Myb domain
PfamPF002491.4E-14246287IPR001005SANT/Myb domain
CDDcd001672.66E-12247288No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 543 aa     Download sequence    Send to blast
MVSIKNKIQD AIPFRTVGGG PRVWRRDPVA SKVRRVQCCR RDLTGLRLFV PLSVGEEGTR  60
SNSNKSAVRT PIQLQVQRTH RRRSQDPPAV LRSIRNELTR RLGFPPRARD GPFHFGPRLL  120
IPRRCASSPN QGREPAEPSS LYSSPSQESR EQRRASQLAC SSSPLRSVSS TESEREMGRQ  180
PCCDKVGLKK GTWTAEEDHK LVTFLLSHGH CCWRLVPKLA GLLRCGKSCR LRWTNYLRPD  240
LKRGLLSDEE EALVIDLHAQ LGNRWSKIAA RIPGRTDNEI KNHWNTHIKK KLRKMGIDPV  300
THRPLSPAAQ SGEPLTQQQC QDPPQDEPKT SSQRPAGGNE DDDGNEEAPV SAAQPQLAAA  360
SPASAAATVS PSCSSSASDS VTTTPGADVA AWSDPVDLFE VDGIMDMDWA GILSGCGGDG  420
AGISVDLFDH YPGDGFDQQR WANAAYPRQQ VRNKCVAFVR RQSNYPVPFP FRRPPQTKAE  480
QSMPRHLLVP ASKATPALAR MFCHLVPALL SRGVTSASRH GCVTGFVRER LPRVSAGFVL  540
SRR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-271882925108B-MYB
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9646201e-139EU964620.1 Zea mays clone 280394 odorant 1 protein mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66230.12e-80myb domain protein 20