PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00007.1.g04900.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 374aa    MW: 41374 Da    PI: 8.0389
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00007.1.g04900.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.41.3e-14144187650
                           NAM   6 rFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkk 50 
                                   +FhPtdeel+ +yLk+k+++k+l++ e i+++diyk++PwdLp++
  Zjn_sc00007.1.g04900.1.am.mk 144 QFHPTDEELIGFYLKRKIQHKSLPI-ELIRQLDIYKYDPWDLPMS 187
                                   7************************.89**************953 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.09E-13144185IPR003441NAC domain
PfamPF023658.7E-5144182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MRPCTRTDRQ LPRPVRVGQV LCCLRNTTEV HGLCSELSKL WSPAGMMRFD QAESETSIVF  60
PRLASFPADA NWSAASVFPW SWSWSRCPMP HVHGRNADVR GTAHHAVSCR PHEWVWHGPI  120
EVKQARDKPQ TDIPFEDGCG ATRQFHPTDE ELIGFYLKRK IQHKSLPIEL IRQLDIYKYD  180
PWDLPMSIID SSSSRPAAST ALPPSGADHQ NMSVVSAIPL DLPAGMDITS MVLNVTPTSL  240
QNVSRIPTNI EFGQPQHCNS NGSSSLVTRC TVDLPDVGSG INGAQRSINF PFNMQGALPD  300
DWRMTFPAHG PVVLQGIASR GAANPSRDLC TTTARRVFAG LAQWCEKQFL WCISPNGWSA  360
RPARASTLVS WTIG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1964721e-33AC196472.3 Zea mays BAC clone ZMMBBb-235B12 from chromosome 5, complete sequence.
GenBankAK0655321e-33AK065532.1 Oryza sativa Japonica Group cDNA clone:J013032G24, full insert sequence.
GenBankAP0041141e-33AP004114.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1118_G04.
GenBankAP0149581e-33AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankCP0126101e-33CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3306722
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.15e-19NAC family protein