PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00007.1.g03380.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

HB-other

Protein Properties

Length: 200aa MW: 23175.3 Da PI: 9.4287

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00007.1.g03380.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	67.7	1.5e-21	72	127	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k Zjn_sc00007.1.g03380.1.am.mk 72 KKRYHRHTPRQIQQLEAMFKECPHPDENQRMQLSRELGLEPRQIKFWFQNRRTQMK 127 678899***********************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.25E-21	58	129	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.8E-23	66	134	IPR009057	Homeodomain-like
PROSITE profile	PS50071	18.058	69	129	IPR001356	Homeobox domain
SMART	SM00389	1.2E-19	70	133	IPR001356	Homeobox domain
CDD	cd00086	9.11E-18	72	130	No hit	No description
Pfam	PF00046	4.5E-19	72	127	IPR001356	Homeobox domain
PRINTS	PR00031	5.1E-5	100	109	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	104	127	IPR017970	Homeobox, conserved site
PRINTS	PR00031	5.1E-5	109	125	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MEPGAHFLFF LRRTASAAPP ELPRAHSPAD CARSNRPSAR RHGRGLRVRG VRAAMDFGDD 60 VVEGGSDSQR RKKRYHRHTP RQIQQLEAMF KECPHPDENQ RMQLSRELGL EPRQIKFWFQ 120 NRRTQMKAQH ERADNCFLRA ENDKIRCENI VMREALCNVI CPSCGAPPVA DDYFDEQKLR 180 MENARLKEEA SHSYLPPLIA

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KJ728523	1e-167	KJ728523.1 Zea mays clone pUT6828 HB transcription factor (HB83) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001142912.2	9e-87	uncharacterized protein LOC100275344
Swissprot	Q69T58	1e-81	ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBL	A0A3L6F4D2	3e-88	A0A3L6F4D2_MAIZE; Homeobox-leucine zipper protein ROC8
STRING	GRMZM2G145690_P01	3e-86	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15929	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G73360.1	4e-64	homeodomain GLABROUS 11