PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g02710.1.am.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 476aa MW: 52491.6 Da PI: 7.1129 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.9e-19 | 222 | 271 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg++ ++eeAa+a++a +++++g Zjn_sc00007.1.g02710.1.am.mkhc 222 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTYNSPEEAARAYDAEARRIRG 271 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 23.709 | 222 | 279 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-21 | 222 | 280 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.9E-31 | 222 | 280 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.3E-36 | 222 | 285 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.33E-31 | 222 | 281 | No hit | No description |
PRINTS | PR00367 | 4.0E-10 | 223 | 234 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-11 | 223 | 271 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-10 | 245 | 261 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 476 aa Download sequence Send to blast |
TTPYLLRLNH RHSSSSRVRM LWLTLGPHHA FRHLPASTAH HTASHIKLPA PASLPGIVWF 60 AQAKKGSFTI PNPFAFPIHT RFPLLPFLRG GCGGARGADR TMCGGAILAN LTKHPEPRRR 120 LTEGALWPEK KKPKRGGAGG RRRYPAGFVE EDDEDFEADF EEFEGDSGES DLELGQGEDD 180 DVVEIKPFAA KRNFLRDGLS TMTTANFDGP AARSAKRKRK NQYRGIRQRP WGKWAAEIRD 240 PRKGVRVWLG TYNSPEEAAR AYDAEARRIR GKKAKVNFPD TPTGVQKRRA SPAAARAPKS 300 SFEQKPAVKA AMNNPINTNG SCCPSADYTS NKQVVQLDDL TFSPAINSPA PNEDPIMNLH 360 SDQGSNSFSY SDFGWENDTK TPDITSITPV STIAEGDESE FVNKNSNGSL VPPVMDNNPV 420 DLTDGLTDLE PYMRFILDGG ASESIDSFLN LDGSQDVLSN MDLWSFDDMP ISGDFY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-18 | 221 | 279 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-18 | 221 | 279 | 4 | 63 | ATERF1 |
3gcc_A | 4e-18 | 221 | 279 | 4 | 63 | ATERF1 |
5wx9_A | 6e-18 | 222 | 279 | 14 | 72 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025816350.1 | 0.0 | ethylene-responsive transcription factor 1 | ||||
Swissprot | Q6K7E6 | 1e-162 | ERF1_ORYSJ; Ethylene-responsive transcription factor 1 | ||||
TrEMBL | A0A3L6RNH8 | 0.0 | A0A3L6RNH8_PANMI; Ethylene-responsive transcription factor 1-like | ||||
STRING | Pavir.Aa00281.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1039 | 38 | 134 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.2 | 3e-32 | related to AP2 12 |