PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g01400.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | NAC | ||||||||
Protein Properties | Length: 284aa MW: 31483.5 Da PI: 7.7679 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161 | 4.5e-50 | 10 | 135 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksg 81 lppGfrF P+deelv++yL++kv++ v+ evd++++ePw+Lp +k +++ewyfFs rd+kyatg r+nratksg Zjn_sc00007.1.g01400.1.am.mk 10 LPPGFRFYPSDEELVCHYLHNKVANAG----GVMVEVDLHTHEPWELPDVAKLSTNEWYFFSFRDRKYATGLRTNRATKSG 86 79**********************998....5789*************87788999************************* PP NAM 82 yWkatgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 yWkatgkd+ + +k ++++vg++ktLvfy+grap+g kt Wvmhe+r+ Zjn_sc00007.1.g01400.1.am.mk 87 YWKATGKDRVIRNKaaGRAVVGMRKTLVFYRGRAPNGIKTGWVMHEFRM 135 ************99888889***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.14E-60 | 7 | 154 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.892 | 10 | 154 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-28 | 11 | 135 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 284 aa Download sequence Send to blast |
MGLRDIELTL PPGFRFYPSD EELVCHYLHN KVANAGGVMV EVDLHTHEPW ELPDVAKLST 60 NEWYFFSFRD RKYATGLRTN RATKSGYWKA TGKDRVIRNK AAGRAVVGMR KTLVFYRGRA 120 PNGIKTGWVM HEFRMENPHT PPKEDWVLCR VFYKKKADAL DYAMDNEQEL AMARSAIASR 180 KYSSSSGPGY SPPFPALGGT HYHQLPPSSD HHGAAGAGSI NDFAMALLQH NNGIFDFHAQ 240 PLDSGSSVLA AAAGASRDGE QCAGGALIDL GLEEHYSYNS LMQM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-49 | 1 | 159 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-49 | 1 | 159 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-49 | 1 | 159 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-49 | 1 | 159 | 4 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-49 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swm_B | 4e-49 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swm_C | 4e-49 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swm_D | 4e-49 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swp_A | 4e-49 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swp_B | 4e-49 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swp_C | 4e-49 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
3swp_D | 4e-49 | 1 | 159 | 7 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-49 | 1 | 159 | 4 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-49 | 1 | 159 | 4 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK364002 | 2e-93 | AK364002.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2020L05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824302.1 | 1e-159 | protein CUP-SHAPED COTYLEDON 3-like | ||||
Swissprot | Q84TE6 | 3e-60 | NAC22_ARATH; NAC domain-containing protein 21/22 | ||||
TrEMBL | A0A2S3GUT5 | 1e-158 | A0A2S3GUT5_9POAL; Uncharacterized protein | ||||
STRING | Si017967m | 1e-158 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP697 | 38 | 166 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28530.1 | 1e-78 | NAC domain containing protein 74 |