PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00007.1.g00390.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 253aa MW: 26373.1 Da PI: 7.8262 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00071 | 68 | 90 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+k+F++ L H +H Zjn_sc00007.1.g00390.1.sm.mk 68 YECRTCNKCFPTFQALGGHRASH 90 99**********99999998887 PP | |||||||
2 | zf-C2H2 | 12.3 | 0.00053 | 157 | 179 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++Cg F + L H+r+H Zjn_sc00007.1.g00390.1.sm.mk 157 HECSICGAEFASGQALGGHMRRH 179 78********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.01E-8 | 67 | 90 | No hit | No description |
Pfam | PF13912 | 1.4E-10 | 67 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.014 | 68 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 68 | 90 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 70 | 90 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.01E-8 | 152 | 179 | No hit | No description |
Pfam | PF13912 | 1.0E-12 | 156 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.64 | 157 | 184 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.016 | 157 | 179 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 159 | 179 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MAHCLILLAQ GGAGAVVDSK PASAPQPQPP VVPHQAPPPA VKSERYTSRK YTEAATTADG 60 VKAGFYVYEC RTCNKCFPTF QALGGHRASH KKPRLPAGDQ EEISNKPSPA TMTTASPPPI 120 PPPRIDLVAV FPDVTTALSL NSHVTAGSGG GEKLRVHECS ICGAEFASGQ ALGGHMRRHR 180 PLNAPVTAIT TMDTKKEGSG ASINLELDLN LPAPSDVEEA VSLPPVALGL GQFNDGKKAG 240 LMLTASALVD CHY |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP003989 | 8e-68 | AP003989.4 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1063_D06. | |||
GenBank | AP004026 | 8e-68 | AP004026.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1136_C04. | |||
GenBank | AP014958 | 8e-68 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012610 | 8e-68 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025822199.1 | 1e-104 | zinc finger protein ZAT5-like | ||||
TrEMBL | A0A0A9HRL3 | 1e-104 | A0A0A9HRL3_ARUDO; Uncharacterized protein | ||||
STRING | Sb04g037850.1 | 6e-97 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2013 | 32 | 85 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04390.1 | 3e-41 | C2H2 family protein |