PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g07210.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 334aa    MW: 36349.5 Da    PI: 4.9978
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g07210.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-12119163655
                                   HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                    ++Er RR+r+N+++  Lr+++P+      +K++Ka+i + A+ YI +Lq
  Zjn_sc00006.1.g07210.1.sm.mk 119 MAMERDRRRRLNEKLYALRSVVPNI-----TKMDKASIIRDAIAYIEKLQ 163
                                   589*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.02E-17112178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.183113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.79E-15116167No hitNo description
PfamPF000102.8E-10118163IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-16119182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.7E-15119168IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 334 aa     Download sequence    Send to blast
METDGLGVGF DFYWTPPPRL VLDTPDLDDL SDFSFSRYLL LLCFFLVMMA GIVDCNCVSM  60
YVPVAPADSL SSGLYPYHEG SNSPDGANSY TTAAAVPIAP SSPPPQQLMT GRDAASKNMA  120
MERDRRRRLN EKLYALRSVV PNITKMDKAS IIRDAIAYIE KLQEEERRML AEIAALESST  180
AAVEAEDAGG LAADDADSFP CPKKPRRAPP ADDGARRAPS APPVQILEEM RSCDAQVQVS  240
EAGERVAVVS VRCSRGRDAV SKVCRALEPL RLRIVTATVA AVGDTVVHTM FTTEEMDGGH  300
LKRTIQAALS QIDMTGRSTF QIRIVRQMNG CKDA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14111191282Transcription factor MYC2
5gnj_B2e-14111191282Transcription factor MYC2
5gnj_E2e-14111191282Transcription factor MYC2
5gnj_F2e-14111191282Transcription factor MYC2
5gnj_G2e-14111191282Transcription factor MYC2
5gnj_I2e-14111191282Transcription factor MYC2
5gnj_M2e-14111191282Transcription factor MYC2
5gnj_N2e-14111191282Transcription factor MYC2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823077.11e-92transcription factor bHLH35-like isoform X2
TrEMBLA0A0A9IMR01e-109A0A0A9IMR0_ARUDO; Uncharacterized protein
STRINGPavir.Gb02374.1.p4e-92(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-31bHLH family protein