PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g07170.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 294aa    MW: 32729 Da    PI: 6.7877
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g07170.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.99e-1480125555
                                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                             HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                     + ++Er RR+++N+++ eLr+++P+      +K++Ka+i + A+eYI +Lq
  Zjn_sc00006.1.g07170.1.sm.mkhc  80 NIIMERDRRRKLNEKLYELRSVVPNI-----TKMDKASIIKDAIEYIEQLQ 125
                                     5689*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.13975124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.02E-1379129No hitNo description
SuperFamilySSF474598.11E-1779138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-1180125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1581136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.7E-1681130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.95E-5203269No hitNo description
CDDcd048730.00215204267No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDAAEMGDSF ENYWETQRFF DCEEFMSSIY PGSGGAGEDT MSYYDSSSPD GSHSSSAAPA  60
EFGHKAQSAG GGGVAGANKN IIMERDRRRK LNEKLYELRS VVPNITKMDK ASIIKDAIEY  120
IEQLQAEERQ TLQEVRAPES AAPGHGNVGT YNYEHDEGVL LPTERRKRTK RAQSAPSLPA  180
PSAAPSPPVE VLELRVSEVG DRVLVVSVTC RKRRDAMARV CRAIEELRLR VITANITSVA  240
GCLVHTVFVE VDHTDRIQMK QMIEAALRVN KAYLLRQSRR MFCYEALLRK ALDP
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9697842e-62EU969784.1 Zea mays clone 335640 DNA binding like mRNA, complete cds.
GenBankKJ7279672e-62KJ727967.1 Zea mays clone pUT6080 bHLH transcription factor (bHLH116) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975234.11e-106transcription factor bHLH35
TrEMBLA0A1E5V0091e-106A0A1E5V009_9POAL; Transcription factor bHLH35
STRINGSi010812m1e-105(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.15e-50bHLH family protein