PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g06180.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 906aa    MW: 102541 Da    PI: 5.3334
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g06180.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29e-14853248
                                    SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                    g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
  Zjn_sc00006.1.g06180.1.sm.mkhc  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                                    78*****************************.************986 PP
2Myb_DNA-binding32.91.5e-1060103248
                                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                       WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
  Zjn_sc00006.1.g06180.1.sm.mkhc  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                                     68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139214.1E-131070No hitNo description
CDDcd001677.17E-121053No hitNo description
SuperFamilySSF466895.75E-2133108IPR009057Homeodomain-like
CDDcd116591.64E-3055106No hitNo description
Gene3DG3DSA:1.10.10.603.1E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118312.9E-42406610IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACAKD ENYEPNDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRKR NRKRKGIDYN AEIPFEKRPP PGFYDTVGED KPPEHVQFPT  240
TIEDLEGKRR VDIESQLRKQ DIARNKILQR QDAPAAIMQA NKLNDPEAVT KRSKLMLPPP  300
QISDHELEEI AKMGSAGDPS LVEELGEGST ATRALLSSYS QTPRLGMTPL RTPQRTPAGK  360
VDAIMMEAEN LARLRESQTP LLGGDNPDLH PSDFSGVTPR KKEIQTPNPM ATPLASPGAT  420
PRIGMTPSRD GNSFGLTPKA TPFRDELRIN EEVDMQDSAK LELRRQAELR KSLRSGFASI  480
PQPKNEYQMV MPPITEDEKE EAEEKIEEDM SDRLARERAE EQARQEALLR KRSKVLQRSL  540
PRPLAASAEA DDLISEELLR LLEHDNAKYP LDEKSQKEKK KGNKRQASSM VEEEIQYLRV  600
AMGHENESFE DFVKAHDACL EDLMYFPTNN SYGLASVAGN ADKVTALQNE FEIVKKRMDD  660
EAKKASRYEQ KIKLLTQGYQ ARAGKLWSQI QDTFKQMDTA ATELECFQEL QKQEQMAATY  720
RVRNLTEEVN KQKVLERTLQ SRYGDLLSSY QRIQEQLEER KSQLKIQEAV EAENNSQDVE  780
AQNHAAREES ERYLSVEAEK AHMNTVSHEE HAGSKQINED QMVVDNSNAD GEFVGPIPPA  840
PEHAQENNGE PPVQENSSFT QSGDAGAGNV ADDKNKLPTV EAGINGDATL SSVQAITNEE  900
NGMVPE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.027473792Cell division cycle 5-like protein
5xjc_L0.027473792Cell division cycle 5-like protein
5yzg_L0.027473792Cell division cycle 5-like protein
5z56_L0.027473792Cell division cycle 5-like protein
5z57_L0.027473792Cell division cycle 5-like protein
5z58_L0.027473792Cell division cycle 5-like protein
6ff4_L0.027473792Cell division cycle 5-like protein
6ff7_L0.027473792Cell division cycle 5-like protein
6icz_L0.027473792Cell division cycle 5-like protein
6id0_L0.027473792Cell division cycle 5-like protein
6id1_L0.027473792Cell division cycle 5-like protein
6qdv_O0.027473792Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDTRKRNRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025823518.10.0cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLA0A1E5UVC00.0A0A1E5UVC0_9POAL; Cell division cycle 5-like protein
STRINGPavir.Ga02351.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44163553
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]