PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g05990.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family bHLH
Protein Properties Length: 667aa    MW: 71205.6 Da    PI: 9.3177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g05990.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH231.4e-07490545455
                                   HHHHHHHHHHHHHHHHHHHHHCTSCCC.......TTS-STCHHHHHHHHHHHHHHH CS
                           HLH   4 ahnerErrRRdriNsafeeLrellPkas....kapskKlsKaeiLekAveYIksLq 55 
                                   +h+ +Er RR++i +++  L++l+P +         +   Ka +L + ++Y++sLq
  Zjn_sc00006.1.g05990.1.am.mk 490 SHSLAERVRREKISERMKLLQSLVPGCNkvsyLSLMPITGKALMLDEIINYVQSLQ 545
                                   8*************************87688766777889**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.22E-14484562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-10484549No hitNo description
Gene3DG3DSA:4.10.280.105.2E-14486562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.18486544IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-4490545IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-8492550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 667 aa     Download sequence    Send to blast
MVLTQLTHSP ARSLCKTSSS YTYVCFRPSH DDDGRVSRRE RPRETSRNRN QPTGTCVRSL  60
FRWMDPQRSI HACPCCSGHA WPGSSPAHVV TPRRPRSRLQ SSAGSSPHAS AASRRCDAHT  120
PVCMQQVPGA PYVLVRTSTH VSFLEGSSSS SSSRLARSLG NRKTTTRKKP ETAAALKIVL  180
RLDPRAGRSA AVQRRGWHLE LAARPSPSRR PAGPPSAARQ TTLLTALFFP LSACSSRPHS  240
PPTFRRTVSN ASQEMADEHF FPVGDFPSGL GAAPFFGSGP YAPPVPPPGL ESLDAAAMAP  300
FGMLPWASEH PIPTDSAATA TAHFDSALSS LVTSPAHAGC FGDDDDVAIG DLIGRLGSIC  360
NNAAASANNS CYSTPLSSPP RGASSPAGLA FRQGGHFHYP GPLEGAGGRL SRVASSKSHG  420
AARKRKAATS GKGKARTAAA NGSGSPKRPK VTGDGDTDDV AAGDAEEDTK PEPAKDYIHV  480
RARRGQATDS HSLAERVRRE KISERMKLLQ SLVPGCNKVS YLSLMPITGK ALMLDEIINY  540
VQSLQRQVEF LSMKLSTMNP ELDIDAQFLP ASDNDAVTMM HHHQTVPLGS PDQQDPFAGA  600
AAVHPAMLDP CTTGSAFYHG AGAGFGGWDA AQDELIQSVV HNQHHRHHQD QDQDQQHPDR  660
GHGFHGT
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745734e-47EU974573.1 Zea mays clone 453265 BHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825248.11e-100transcription factor bHLH62-like
TrEMBLA0A0A9GES51e-117A0A0A9GES5_ARUDO; Uncharacterized protein
STRINGMLOC_66841.17e-96(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.11e-45bHLH family protein