PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g04760.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 331aa    MW: 36095.9 Da    PI: 8.4756
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g04760.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix772.8e-2420115179
                        trihelix   1 rWtkqevlaLiearremeerlr.rgk.................lkkplWeevskkmrergferspkqCkekwenlnkry 61 
                                     rWt+qe+l+Lie++r +e++ r rg+                 ++ ++W++v++++r++g+ r+p+qC+++w+nl+++y
  Zjn_sc00006.1.g04760.1.sm.mkhc  20 RWTRQEILVLIEGKRVVERSGRgRGRgrgrsrgggggadgggaAEPTKWAAVAEYCRRHGVDRGPVQCRKRWSNLAGDY 98 
                                     8***************999998533355667888888899998************************************ PP

                        trihelix  62 kkikegekkrtsessstc 79 
                                     kki+e e++  ++ ss +
  Zjn_sc00006.1.g04760.1.sm.mkhc  99 KKIRECERGA-DGPSSFW 115
                                     *******986.4444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.1682095IPR017877Myb-like domain
PfamPF138371.2E-1020109No hitNo description
Gene3DG3DSA:1.10.10.602.0E-52094IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MSDAGEAGAA GKGRAQRLPR WTRQEILVLI EGKRVVERSG RGRGRGRGRS RGGGGGADGG  60
GAAEPTKWAA VAEYCRRHGV DRGPVQCRKR WSNLAGDYKK IRECERGADG PSSFWAMRSD  120
ARKERRLPGF FDREVYDILE GRGAGGRNNA VVPRVDLELE EGKERQRPVA VVDHSGARAA  180
TDGLFSSSSD EDDDDDHDEA ATPPAVPTPA LPPAQVFVPD SEKTTEPPRI ERSEQGTSKR  240
KGLDELTDDS PVQGQQKRQH NGDEGSGRAT TNLQGQLLHI LDRSGRMVAT QLEAQNINSR  300
LDREQRKDQA SSLLGELGKM ADALYRIADK L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14050RGRGRGRGRSR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9493564e-95EU949356.1 Zea mays clone 402974 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025826049.11e-132trihelix transcription factor ASR3-like isoform X2
TrEMBLA0A2S3I6631e-130A0A2S3I663_9POAL; Uncharacterized protein
STRINGSi010590m1e-116(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39152648
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-42Trihelix family protein