PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g04640.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 253aa    MW: 26533.9 Da    PI: 4.3976
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g04640.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.91.2e-182980156
                           AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                                  ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++l+g+
  Zjn_sc00006.1.g04640.1.am.mk 29 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAVAYDRAARSLRGA 80
                                  5799******.**********843...4*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.91E-292988No hitNo description
SMARTSM003801.2E-323093IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-293087IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-213087IPR016177DNA-binding domain
PROSITE profilePS5103221.5623087IPR001471AP2/ERF domain
PfamPF008478.5E-113079IPR001471AP2/ERF domain
PRINTSPR003671.3E-83142IPR001471AP2/ERF domain
PRINTSPR003671.3E-85369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MMNFSSSSSS DKKSSSSRRG QQPDTTNTTR YLGVRRRPWG RYAAEIRDPA TKERHWLGTF  60
DTAEEAAVAY DRAARSLRGA RARTNFAYPD LPLGSSVTPY LSPDLTSGDN SAQLLQPFYA  120
ADPAAALANP AANGAAVKDD YDYGYSDADM NSLMDDVAIP DDLSAMGGGC GGAMMDMSSM  180
YGTGAANAGA GGGWCDASEF GGYGAGASTT APGAHGMYFE EGHVHSPLFS PMPTVDDACA  240
DGFQLGGSSS YYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1830971481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9741061e-122EU974106.1 Zea mays clone 439808 AP2 domain containing protein mRNA, complete cds.
GenBankKJ7276701e-122KJ727670.1 Zea mays clone pUT5597 AP2-EREBP transcription factor (EREB91) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001152173.11e-102AP2 domain containing protein
TrEMBLA0A3L6Q9Q71e-101A0A3L6Q9Q7_PANMI; Ethylene-responsive transcription factor LEP-like
STRINGPavir.Gb01913.1.p1e-111(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.12e-23ERF family protein