PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00006.1.g04150.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

S1Fa-like

Protein Properties

Length: 76aa MW: 8391.11 Da PI: 10.7353

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00006.1.g04150.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	131.6	2e-41	7	76	2	70
S1FA 2 avakvea.kGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +v+++e+ kGlnPG+ivllvv++++l+f+vgny+lyvyaqk+lPP+kkkPvskkklkrek kqGv++PGe Zjn_sc00006.1.g04150.1.sm.mkhc 7 NVVIEEVnKGLNPGMIVLLVVASFMLLFFVGNYALYVYAQKTLPPKKKKPVSKKKLKREKQKQGVSAPGE 76 67888888*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD019013	1.0E-15	8	76	No hit	No description
Pfam	PF04689	2.1E-38	12	76	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MGTLANNVVI EEVNKGLNPG MIVLLVVASF MLLFFVGNYA LYVYAQKTLP PKKKKPVSKK 60 KLKREKQKQG VSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633609.1	1e-26	DNA-binding protein S1FA2
Swissprot	Q7XLX6	9e-28	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A0A0D3FVJ5	1e-25	A0A0D3FVJ5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0D9ZKE5	1e-25	A0A0D9ZKE5_9ORYZ; Uncharacterized protein
TrEMBL	A0A0E0H0D2	1e-25	A0A0E0H0D2_ORYNI; Uncharacterized protein
TrEMBL	A0A0E0P8S3	1e-25	A0A0E0P8S3_ORYRU; Uncharacterized protein
STRING	OGLUM04G11330.1	2e-26	(Oryza glumipatula)
STRING	ORUFI04G12840.1	2e-26	(Oryza rufipogon)
STRING	ONIVA04G09610.1	2e-26	(Oryza nivara)
STRING	OBART04G11650.1	2e-26	(Oryza barthii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5154	35	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37120.1	4e-10	S1FA-like DNA-binding protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]