PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g03060.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ZF-HD
Protein Properties Length: 706aa    MW: 75956 Da    PI: 9.8924
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g03060.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer85.65.3e-27453499556
                   ZF-HD_dimer   5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 
                                   +YkeC++NhAa++Gg+a+DGCgEfmp+     ++++lkC ACgCHR+FHRr 
  Zjn_sc00006.1.g03060.1.am.mk 453 KYKECMRNHAAAMGGQAFDGCGEFMPD-----SSDSLKCVACGCHRSFHRRA 499
                                   8*************************8.....678***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.9E-22453499IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.5E-23453499IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-18453498IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152325.714454499IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466895.08E-17569634IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-27571636IPR009057Homeodomain-like
TIGRFAMsTIGR015651.9E-25575632IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 706 aa     Download sequence    Send to blast
MSRRNDRLIQ FHQQDKDDEA LEKDEARRRD RQTRRGAEKT RRGEAWREQA EEDAGAMVAA  60
CADCSGSWQG GQGGAVPLPS PSIGVLARLD LALVSVPGLK PLLAPVRCRS ADSLCCVRAR  120
VALYDAKARW ITRQQSIVQD HSTRKLSGVS RCPCAPLHCP GAALYRSRHA PSRRMPSGAC  180
VGLSRTNVHL LPFTSHPPDP HLHGDQVQCR ARAVERCATP SRDICTGVTG GSVSIRLPLL  240
PAFAFLPPSA PRGDAVPCVA CVVTVVGGSD ADEGPSPAEG HGLLAAPLSN TGSSTHRRDF  300
LSTSPPSYRI GAVRPGGPCA PPSPHVVGPR RGECHEYRLQ CKLDTLPAVN PRARGVSGAG  360
LLAHVARGEH RITPLNWHRC RSRSRKRLAR VKRAQCRRDR TQAARTRARE RDSVRLADGV  420
RRENSSGWWC WDMMEHLSLV PYEGSGGGGG GPKYKECMRN HAAAMGGQAF DGCGEFMPDS  480
SDSLKCVACG CHRSFHRRAA GTLPVFFRPP PPPHHVAALQ AFLASAPVPP PHLALPYHAV  540
PAAPWNVRGG SETPPRPEDF GVVGGAMVSG GDAGRKRFRT KFTPEQKARM REFAEKQGWR  600
VNRNDDGALE RFCKEIGVRR QVLKVWMHNH KNHHGQKADQ NHHHLAASVP SAGAPGATAS  660
AIINPAAGTG TGTGIIPGVG DDDDDDTDDS PLRAAVSSPS LSPISV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-225766321874ZF-HD homeobox family protein
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1378386RCRSRSRKR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7270257e-52KJ727025.1 Zea mays clone pUT4006 ZF-HD transcription factor (ZHD15) gene, partial cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP136492225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.24e-43homeobox protein 31