PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g02570.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 470aa    MW: 51760 Da    PI: 7.4805
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g02570.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.42.1e-471112751129
                           NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk................................ 49 
                                   +ppGfrFhPtd+el+ +yLkkk+  +k++l evi+evd++k+ePw+L+                                 
  Zjn_sc00006.1.g02570.1.am.mk 111 VPPGFRFHPTDKELLLYYLKKKIGFEKFDL-EVIREVDLNKIEPWELQVrlvhartlfrslvvggdassswctdwrgrsme 190
                                   69****************************.99**************95589************************99988 PP

                           NAM  50 .....kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmh 124
                                        ++ +  ++ewyfFs++d+ky+tg+r+nrat++g+Wkatg+dk + + + +++g++ktLvfy+grap+g+ktdW+mh
  Zjn_sc00006.1.g02570.1.am.mk 191 haercRIGSaPQNEWYFFSHKDRKYPTGSRTNRATTAGFWKATGRDKCIRT-SYSKIGMRKTLVFYRGRAPHGQKTDWIMH 270
                                   8776633333567*************************************9.8889************************* PP

                           NAM 125 eyrle 129
                                   eyrle
  Zjn_sc00006.1.g02570.1.am.mk 271 EYRLE 275
                                   ***85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.92E-16101159IPR003441NAC domain
PROSITE profilePS5100551.843111297IPR003441NAC domain
PfamPF023655.5E-26112274IPR003441NAC domain
SuperFamilySSF1019414.71E-37202297IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048829Biological Processroot cap development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MRTTSSVDGS SSKASMHLLW EQSSDPILQL TEFPALALMA VPCVLRDQAG FIPVRRRQLF  60
PVFTTVQLLG WPTQLVLASC CVDDAHAALT VERATRAGVL TMAAFSSSNG VPPGFRFHPT  120
DKELLLYYLK KKIGFEKFDL EVIREVDLNK IEPWELQVRL VHARTLFRSL VVGGDASSSW  180
CTDWRGRSME HAERCRIGSA PQNEWYFFSH KDRKYPTGSR TNRATTAGFW KATGRDKCIR  240
TSYSKIGMRK TLVFYRGRAP HGQKTDWIMH EYRLEEADDA QGGTGEDGWV VCRVFKKKCF  300
FKIGAGGEGS TRQGADAGDH LAVSPPLGSH THQGALASHY MHPHHQYYHA ASSSYYSQMQ  360
VPAAYTHQVQ VQDLLTNHRP TAYAGYDDFS GLPVDHPAAG SLDVGSSDGV AATDGGQLGE  420
GSRDEASGAA EQQWQAIDGF DSGAGSAAVE QMTVRAGQRG GEMDLWGYGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-4611129817166NO APICAL MERISTEM PROTEIN
1ut4_B1e-4611129817166NO APICAL MERISTEM PROTEIN
1ut7_A1e-4611129817166NO APICAL MERISTEM PROTEIN
1ut7_B1e-4611129817166NO APICAL MERISTEM PROTEIN
4dul_A1e-4611129817166NAC domain-containing protein 19
4dul_B1e-4611129817166NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00431DAPTransfer from AT4G10350Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715421e-138EU971542.1 Zea mays clone 366845 NAC domain-containing protein 76 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824150.10.0protein BEARSKIN1-like
SwissprotQ9SV871e-102BRN2_ARATH; Protein BEARSKIN2
TrEMBLA0A3L6QA670.0A0A3L6QA67_PANMI; Protein BEARSKIN1-like
STRINGPavir.Gb01599.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92973046
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G10350.12e-84NAC domain containing protein 70
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Kamiya M, et al.
    Control of root cap maturation and cell detachment by BEARSKIN transcription factors in Arabidopsis.
    Development, 2016. 143(21): p. 4063-4072
    [PMID:27803060]