PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00006.1.g02360.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 385aa    MW: 41874 Da    PI: 6.9776
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00006.1.g02360.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.63.2e-1363144286
                      trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergf...erspkqCkekwenlnkrykkikegekkrtsessst 78 
                                   W++  + aLi+a  e+  +l+rg+l+ p+W+ev++++ ++ g+   ++s +qCk++ + l+kryk +++   +       +
  Zjn_sc00006.1.g02360.1.am.mk  63 WSEGATSALIDAWGERFVALGRGSLRHPQWQEVADAVsSRDGYskaSKSDVQCKNRVDTLKKRYKVERAKPVS-------S 136
                                   *************************************86667733256999**************99887775.......5 PP

                      trihelix  79 cpyfdqle 86 
                                   +++fd+l+
  Zjn_sc00006.1.g02360.1.am.mk 137 WQFFDRLD 144
                                   99999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.3E-2361146No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MDDDDGVPVS ASPSPASSPV TDPVTVAAAP PGGAFALKLP IQRTAASLYP TSGGGGGGRE  60
DAWSEGATSA LIDAWGERFV ALGRGSLRHP QWQEVADAVS SRDGYSKASK SDVQCKNRVD  120
TLKKRYKVER AKPVSSWQFF DRLDELLAPI YGQKPADGIG GGHIPNGRDP MPAALRAGFP  180
QRSRTAAVKR REPSTEPSAS VESSDGFPPP ALPVANGKRR RTEEDRGDGG SDRDRVQGLR  240
ELSVAIRRLG EAYERVETAK LEQAVETERR RMEFARELES QRVQIFLNTQ MELRQSKNRS  300
SPAAVTIPSS TITVGAGSRR MSVAADAGGS SNHHSRYRIS HGDRHRHAPR HHYRYHDNHH  360
AASVAANEGE QTGEEDDDEE EEESQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0425181e-110BT042518.1 Zea mays full-length cDNA clone ZM_BFb0313L06 mRNA, complete cds.
GenBankKJ7278541e-110KJ727854.1 Zea mays clone pUT5899 trihelix transcription factor (THX15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004975744.11e-165trihelix transcription factor ASIL2
TrEMBLA0A368RUH81e-164A0A368RUH8_SETIT; Uncharacterized protein
STRINGSi010246m1e-164(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24043069
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.18e-43sequence-specific DNA binding transcription factors