PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00005.1.g09550.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Dof | ||||||||
Protein Properties | Length: 172aa MW: 19364.5 Da PI: 7.0171 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.8 | 5.5e-39 | 75 | 134 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k+l+ prC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrk+++s Zjn_sc00005.1.g09550.1.sm.mk 75 PDKILPYPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKSRNS 134 789999**************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 1.0E-30 | 72 | 132 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 8.3E-31 | 77 | 133 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 27.484 | 79 | 133 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MKVDMRHEKE VEEMEGNASQ EMENIGLDES ATLDHKKDDK EQINNAEDKA ASEPNGDNGK 60 TANDESGQEK TVKKPDKILP YPRCNSMDTK FCYYNNYNVN QPRHFCKNCQ RYWTAGGTMR 120 NVPVGAGRRK SRNSSLHYRQ LLMAPDCLMG SKVDISRSLH PEALASSSSS ST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence (By similarity). Regulates a photoperiodic flowering response. Transcriptional repressor of 'CONSTANS' expression. {ECO:0000250, ECO:0000269|PubMed:19619493}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Highly expressed at the beginning of the light period, then decreases, reaching a minimum between 16 and 29 hours after dawn before rising again at the end of the day. {ECO:0000269|PubMed:19619493}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025815271.1 | 2e-83 | cyclic dof factor 2-like | ||||
Swissprot | Q8LFV3 | 6e-42 | CDF3_ARATH; Cyclic dof factor 3 | ||||
TrEMBL | A0A1D8RJ04 | 4e-94 | A0A1D8RJ04_ELECO; DNA-binding with one finger protein 15 | ||||
STRING | Sb03g010280.1 | 2e-82 | (Sorghum bicolor) | ||||
STRING | Traes_3AS_4C4673A12.1 | 6e-83 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1434 | 38 | 116 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47500.1 | 3e-44 | cycling DOF factor 3 |
Publications ? help Back to Top | |||
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