PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00005.1.g07100.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 321aa MW: 34180.7 Da PI: 4.6378 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.7 | 1.3e-08 | 27 | 58 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 rg+WT eEd ll ++++ +G g+W++ ar+ g Zjn_sc00005.1.g07100.1.am.mk 27 RGPWTLEEDNLLMNYIACHGEGRWNLLARCSG 58 89***************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.6E-9 | 20 | 56 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.062 | 22 | 55 | IPR017877 | Myb-like domain |
SuperFamily | SSF46689 | 1.94E-7 | 24 | 56 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.9E-6 | 27 | 55 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.16E-4 | 29 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 321 aa Download sequence Send to blast |
MSQIRKGAMA VASSKQRQQE EEMELRRGPW TLEEDNLLMN YIACHGEGRW NLLARCSGEF 60 FLQVEEDGQE LPAQKQARQL RVDANSPVFR DAVRCYWMPR LLEKMAATTA HHNSHVELAA 120 VPLPLHPAAS IGDVMHMGSS SPIHHGSQSQ LHDATNVPAE SGGGGGGYQQ RYYYHEVVDP 180 SPSTSTTSGS GSTTAAALPP VPCFSELSWV DQQCYGGGDL GARTGAFDFA ALGSLGLDGL 240 DLGPADCDYS DTTLLDYLSS AYTGSAATMM ILDSSGGGTG TGNGATDDGA YYGGPTTPWR 300 TEDLCQATAR KLGDHQWGGG I |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HF679427 | 4e-39 | HF679427.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB21 protein. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002455261.1 | 3e-83 | transcription factor MYB2 | ||||
TrEMBL | A0A1E5VU10 | 2e-85 | A0A1E5VU10_9POAL; Transcription factor MYB108 | ||||
STRING | Pavir.Ea00660.1.p | 1e-94 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP198 | 38 | 330 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68320.1 | 3e-17 | myb domain protein 62 |