PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g06960.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

LBD

Protein Properties

Length: 287aa MW: 30767.9 Da PI: 8.1595

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g06960.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	97.8	1.1e-30	4	107	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvy 74 +C++C+vlr++C+++C+++p++ p++q +++ +++k++G++ +++l++a p++ r+++++sl+yeA+ r+ +Pvy Zjn_sc00005.1.g06960.1.sm.mkhc 4 SCNGCRVLRKGCSDNCAIRPCLqwirsPDAQGNATVFLAKFYGRAGLINLISAGPDNVRPAIFRSLIYEACGRMLNPVY 82 6***********************99*********************************************** PP DUF260 75 Gavgvilklqqqleqlkaelallke 99 G+vg+++++++ql+q+++e +l+++ Zjn_sc00005.1.g06960.1.sm.mkhc 83 GSVGLLWSGNWQLCQAAVENVLRGR 107 ***************99987765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.757	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.6E-24	4	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MRMSCNGCRV LRKGCSDNCA IRPCLQWIRS PDAQGNATVF LAKFYGRAGL INLISAGPDN 60 VRPAIFRSLI YEACGRMLNP VYGSVGLLWS GNWQLCQAAV ENVLRGRPIA PPPPAATAVP 120 PLKTCDIRHV VRRGDHGGVA ANGVADSSRG QFKRRGAQRS ARTDTAIELD FSWPSSATLV 180 NVEHALPLNW APGNKPGQEY SASHDSAPET GSSKSVDTVE VSHVSQSEPE APRGIDGREV 240 GLDLALGLLP AAHKIEPLQF DNDQHDQRGE TVKIGVAFMV SICGNIV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025818644.1	1e-133	LOB domain-containing protein 42-like
Swissprot	Q9M886	3e-72	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A3L6R371	1e-135	A0A3L6R371_PANMI; LOB domain-containing protein 42
STRING	Pavir.J11724.1.p	1e-127	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1235	37	127

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	2e-67	LOB domain-containing protein 41