PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g05010.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 295aa    MW: 32941.9 Da    PI: 7.8299
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g05010.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.61.8e-151663148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  +g W++eEde+l+  ++++G  +W++I++  g+ R++k+c++rw +yl
  Zjn_sc00005.1.g05010.1.am.mk 16 KGLWSPEEDERLASHIARFGVSCWSSIPELTGLQRCGKSCRLRWMNYL 63
                                  678*******************************************97 PP
2Myb_DNA-binding46.67.7e-1569111145
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                   rgr++++E++l++ ++k lG+  W+ Ia+ ++ gR+++++k++w+
  Zjn_sc00005.1.g05010.1.am.mk  69 RGRFSQQEEDLIIALHKTLGNS-WSQIAASLP-GRSDNEIKNFWN 111
                                   89******************99.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.9E-23866IPR009057Homeodomain-like
PROSITE profilePS5129416.1371163IPR017930Myb domain
SuperFamilySSF466892.3E-2714110IPR009057Homeodomain-like
SMARTSM007173.4E-111565IPR001005SANT/Myb domain
PfamPF002493.5E-141663IPR001005SANT/Myb domain
CDDcd001677.51E-101963No hitNo description
PROSITE profilePS5129423.40764118IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.2E-2567118IPR009057Homeodomain-like
SMARTSM007171.5E-1468116IPR001005SANT/Myb domain
PfamPF002492.6E-1369111IPR001005SANT/Myb domain
CDDcd001678.47E-1071111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MGRAHPCCSE EKKLRKGLWS PEEDERLASH IARFGVSCWS SIPELTGLQR CGKSCRLRWM  60
NYLRPDLKRG RFSQQEEDLI IALHKTLGNS WSQIAASLPG RSDNEIKNFW NARLRKKLRQ  120
REASTADSKD PAVLRSRHRG EDDERKLQLP SAMFNPLCAA RVEDQPWGTA DHTMVSAVTS  180
STSCQDVVDY TTPGAVIADA HDRRNAAAAA ELQTLSASST EAVGGSEDDF LRAMVEEASH  240
LFGDFYNIDG SQDERISFWE GHTVQNAQLT PIRRDLVSSK VPKALHRQSA GIPAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-271411825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112118RLRKKLR
2113119LRKKLRQ
3114120RKKLRQR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that coordinates a small network of downstream target genes required for several aspects of plant growth and development, such as xylem formation and xylem cell differentiation, and lateral root formation (PubMed:22708996). Regulates a specific set of target genes by binding DNA to the AC cis-element 5'-ACCTAC-3' (PubMed:23741471). Functions as a transcriptional regulator of stomatal closure. Plays a role the regulation of stomatal pore size independently of abscisic acid (ABA) (PubMed:16005292). Required for seed coat mucilage deposition during the development of the seed coat epidermis (PubMed:19401413). Involved in the induction of trichome initiation and branching by positively regulating GL1 and GL2. Required for gibberellin (GA) biosynthesis and degradation by positively affecting the expression of the enzymes that convert GA9 into the bioactive GA4, as well as the enzymes involved in the degradation of GA4 (PubMed:28207974). {ECO:0000269|PubMed:16005292, ECO:0000269|PubMed:19401413, ECO:0000269|PubMed:22708996, ECO:0000269|PubMed:23741471, ECO:0000269|PubMed:28207974}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025817318.11e-108myb-related protein Hv33-like
SwissprotQ8VZQ25e-58MYB61_ARATH; Transcription factor MYB61
TrEMBLA0A3L6SVX51e-110A0A3L6SVX5_PANMI; Transcription factor MYB82-like
STRINGPavir.Eb00460.1.p1e-109(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144481725
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01680.32e-60myb domain protein 55
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Matías-Hernández L, et al.
    AaMYB1 and its orthologue AtMYB61 affect terpene metabolism and trichome development in Artemisia annua and Arabidopsis thaliana.
    Plant J., 2017. 90(3): p. 520-534
    [PMID:28207974]