PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00005.1.g03420.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | Dof | ||||||||
Protein Properties | Length: 237aa MW: 24069.6 Da PI: 9.7604 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 121.8 | 2.3e-38 | 43 | 99 | 4 | 60 |
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 + l+cprCdst+tkfCyynny+l qPr+fCk+CrryWt+GGalrnvPvGgg+rk + Zjn_sc00005.1.g03420.1.sm.mk 43 AGLPCPRCDSTDTKFCYYNNYNLGQPRHFCKGCRRYWTRGGALRNVPVGGGTRKATA 99 6789**************************************************865 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 3.0E-32 | 45 | 98 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.956 | 45 | 99 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 47 | 83 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 2.0E-21 | 47 | 93 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MVHRSAGAAA AMQAGHQAAE GNALALVAAA AAAAGGGGPK EPAGLPCPRC DSTDTKFCYY 60 NNYNLGQPRH FCKGCRRYWT RGGALRNVPV GGGTRKATAA AARRKRASSS SASTASATAL 120 LVSSSPVPLS VSAPAYATTV LPYDLPSFMP ALGTSPLAAV EPDRRLLDLG GSFTSLLAPA 180 PDVRFSAGFL VGGLPPVMPP PASSAPALLL PPPHPPVSQA LAPEGFIWSM GWPDLSI |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT061950 | 4e-57 | BT061950.2 Zea mays full-length cDNA clone ZM_BFb0200H06 mRNA, complete cds. | |||
GenBank | KJ727013 | 4e-57 | KJ727013.1 Zea mays clone pUT3994 C2C2-DOF transcription factor (DOF7) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002457194.2 | 8e-62 | dof zinc finger protein DOF3.4 | ||||
TrEMBL | A0A3L6R3C5 | 1e-62 | A0A3L6R3C5_PANMI; Uncharacterized protein | ||||
STRING | Pavir.Ea00244.1.p | 6e-62 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP140 | 37 | 367 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G07640.1 | 8e-28 | Dof family protein |