PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00005.1.g03310.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | C2H2 | ||||||||
Protein Properties | Length: 432aa MW: 46016.4 Da PI: 9.3267 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.9 | 4.1e-06 | 73 | 95 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk F r nL+ H r H Zjn_sc00005.1.g03310.1.sm.mk 73 YVCEVCGKGFQRDQNLQLHRRGH 95 9********************88 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 8.62E-8 | 72 | 95 | No hit | No description |
SMART | SM00355 | 0.0081 | 73 | 95 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 11.822 | 73 | 95 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.0E-6 | 73 | 95 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 75 | 95 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 38 | 115 | 145 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 8.3E-4 | 138 | 170 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 8.62E-8 | 145 | 170 | No hit | No description |
SMART | SM00355 | 250 | 150 | 170 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 432 aa Download sequence Send to blast |
MMLKDLAAIQ QQQQLAADES MSNLTSASGD LASVSSYPLP PPAKKKRSLP GNPDPDAEVI 60 ALSPRTLMAT NRYVCEVCGK GFQRDQNLQL HRRGHNLPWK LKQRNPKEAV RKKVYVCPEP 120 GCVHHDPARA LGDLTGIKKH FSRKHGEKKW KCDRCSKRYA VHSDWKAHSK VCGTREYRCD 180 CGNLFSRHAS SRDSFITHRA FCDALAEESA RAVTAAAAMA GQQLHSVLDP SQPFAQSWLT 240 AQQQMELAGA ANSSAVFSSA TRLDQEYVGS STPESSTQPS GLTFGFSPSS TTGTASATHM 300 SATALLQKAA QMGATLSRRS THGQMASTHS TSTGTTTNAT TASPPPAAAA ASTSNVTSTC 360 LGSGTSHFGA DKRSDHEAGG AGGGNNSLTR DFLGLRAFSH GDILSIAGFD PCMSAAAAYE 420 QGRHTNSKPW HA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 8e-31 | 146 | 211 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 8e-31 | 146 | 211 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 99 | 112 | KLKQRNPKEAVRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000305}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00206 | DAP | Transfer from AT1G55110 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015622491.1 | 0.0 | protein indeterminate-domain 7 | ||||
Swissprot | Q8H1F5 | 1e-119 | IDD7_ARATH; Protein indeterminate-domain 7 | ||||
TrEMBL | A0A3L6R126 | 0.0 | A0A3L6R126_PANMI; Uncharacterized protein | ||||
STRING | ORGLA01G0057600.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55110.1 | 1e-103 | indeterminate(ID)-domain 7 |
Publications ? help Back to Top | |||
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