PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g03230.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bHLH

Protein Properties

Length: 540aa MW: 58673.2 Da PI: 8.1235

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g03230.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43	8.3e-14	337	382	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f+ L+++lP+ K +K +iL +A eYI+sL+ Zjn_sc00005.1.g03230.1.am.mk 337 HMISERKRREKLNDSFQALKTVLPPG-----SKKDKTSILIRAREYIRSLE 382 8899******************95.....4999************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.945	332	381	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.98E-14	334	382	No hit	No description
SuperFamily	SSF47459	8.24E-16	335	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.5E-17	336	399	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.7E-11	337	382	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-12	338	387	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MGARNPLGSD GKMLLLDGDV RPPGTATGLV VATPIFCPPR ISIDASSGVN RPDTGRRVAL 60 VGWLQRGIDP RHVGDMNWCS PVRWIRVFLS LQQRWIDRSI AMDSSWFHGY ATANAAGNNG 120 FMCGYAASCT PAELQHEEEE EEMLISSQIH HHLNQISRHM NMDDEVVYDG VLDIQEHPTM 180 VDDLLDPNHA TSFPSSSSSS SLSLRSGSFS CSPDSSAQVF GAPAPAASGH YPEVSSHVPL 240 PPAAPYTNVH VSTAPLAATP PAAGKQASAF KSYAQHLGPR RQPTKPGACG QKMFKTAMSV 300 LSRMHMAASA RYNQQYYYQQ ASAEAVATPP SVNQLQHMIS ERKRREKLND SFQALKTVLP 360 PGSKKDKTSI LIRAREYIRS LESKASELEE KNKELESRLT GHRGSQAGAD DADADKKVQI 420 EITRAAKECW AVEPRDLCTL KIVVRSRCNM TDVVLRTLQC LKDQAGDDVN LVSMNTSGSS 480 AGPPQTSSSP RAVLTMQIKS SRGAKWEEQP VKDAVAKVVA DAALTPPSAA VDETAPRRRQ

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MGARNPLGSD GKMLLLDGDV RPPGTATGLV VATPIFCPPR ISIDASSGVN RPDTGRRVAL  60
VGWLQRGIDP RHVGDMNWCS PVRWIRVFLS LQQRWIDRSI AMDSSWFHGY ATANAAGNNG  120
FMCGYAASCT PAELQHEEEE EEMLISSQIH HHLNQISRHM NMDDEVVYDG VLDIQEHPTM  180
VDDLLDPNHA TSFPSSSSSS SLSLRSGSFS CSPDSSAQVF GAPAPAASGH YPEVSSHVPL  240
PPAAPYTNVH VSTAPLAATP PAAGKQASAF KSYAQHLGPR RQPTKPGACG QKMFKTAMSV  300
LSRMHMAASA RYNQQYYYQQ ASAEAVATPP SVNQLQHMIS ERKRREKLND SFQALKTVLP  360
PGSKKDKTSI LIRAREYIRS LESKASELEE KNKELESRLT GHRGSQAGAD DADADKKVQI  420
EITRAAKECW AVEPRDLCTL KIVVRSRCNM TDVVLRTLQC LKDQAGDDVN LVSMNTSGSS  480
AGPPQTSSSP RAVLTMQIKS SRGAKWEEQP VKDAVAKVVA DAALTPPSAA VDETAPRRRQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	340	345	ERKRRE
2	341	346	RKRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025817328.1	1e-137	putative transcription factor bHLH041
TrEMBL	A0A2T7DSE3	1e-136	A0A2T7DSE3_9POAL; Uncharacterized protein
STRING	Si001328m	1e-135	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2900	31	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	2e-20	bHLH family protein