PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g02840.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

WRKY

Protein Properties

Length: 401aa MW: 42562 Da PI: 6.4074

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g02840.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	50.7	3.6e-16	278	311	2	34
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T--- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpv 34 +Dg++WrKYGqK+ kg+++p +YYrCt+a Cp Zjn_sc00005.1.g02840.1.sm.mkhc 278 SDGCQWRKYGQKMAKGNPCPIAYYRCTMAvACPG 311 7***************************999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.9E-16	262	312	IPR003657	WRKY domain
SuperFamily	SSF118290	2.09E-14	270	318	IPR003657	WRKY domain
PROSITE profile	PS50811	15.445	272	310	IPR003657	WRKY domain
SMART	SM00774	5.8E-9	277	317	IPR003657	WRKY domain
Pfam	PF03106	1.2E-12	279	312	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 401 aa Download sequence Send to blast
MEEIKPERRH RHYVQAVHEE EAEKGGAMER GGLSLLLRQG SSDFGPRREI REVDFFSRDS 60 SGDRRRDGVD GPGGPGCEDV NIGLNLLTAA AASSATATTT VDGDEATTAK DEKMEVTAVE 120 GELRRVSEEN RRLRGLLEEL TRNYSALYQQ LHQVTQQHPH HHLPEDLMSN RSIINTGTFI 180 LSSPRTHLQA SGAPNTSTRQ YADGAGAEDE DSDGAADASP SPSNAAGNSD VVVDGKRRMS 240 QDGTAPAPRQ NGEQAPAEVP GRKARVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPIAY 300 YRCTMAVACP GTHNHPLPST ATAMANTTSA TAAMLVSGPT TSGDGTAIEL LGHHPAALFH 360 HSIPYTSTMA ALSASTPFPT ITLNLTQAPS AGGGGGLQPH S

Sequence ? help Back to Top

Protein Sequence Length: 401 aa Download sequence Send to blast

MEEIKPERRH RHYVQAVHEE EAEKGGAMER GGLSLLLRQG SSDFGPRREI REVDFFSRDS  60
SGDRRRDGVD GPGGPGCEDV NIGLNLLTAA AASSATATTT VDGDEATTAK DEKMEVTAVE  120
GELRRVSEEN RRLRGLLEEL TRNYSALYQQ LHQVTQQHPH HHLPEDLMSN RSIINTGTFI  180
LSSPRTHLQA SGAPNTSTRQ YADGAGAEDE DSDGAADASP SPSNAAGNSD VVVDGKRRMS  240
QDGTAPAPRQ NGEQAPAEVP GRKARVSVRA RSEAPMISDG CQWRKYGQKM AKGNPCPIAY  300
YRCTMAVACP GTHNHPLPST ATAMANTTSA TAAMLVSGPT TSGDGTAIEL LGHHPAALFH  360
HSIPYTSTMA ALSASTPFPT ITLNLTQAPS AGGGGGLQPH S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004967624.1	1e-139	probable WRKY transcription factor 31
TrEMBL	K3XG05	1e-137	K3XG05_SETIT; Uncharacterized protein
STRING	Si000824m	1e-138	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4358	32	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G04450.1	1e-43	WRKY family protein