PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00005.1.g02830.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family LBD
Protein Properties Length: 324aa    MW: 33950.8 Da    PI: 6.441
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00005.1.g02830.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26092.26e-294107199
                        DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGa 76 
                                   +C++C+vlr++C+++C+++p++     p++q++++ +++k++G++ +l+ll+a+ ++   ++++sl+yeA+ r+ +PvyG+
  Zjn_sc00005.1.g02830.1.sm.mk   4 SCNGCRVLRKGCSDGCTIRPCLqwikaPEAQANATVFLAKFYGRAGLLNLLAAAGPDGPAAVFRSLLYEACGRIVNPVYGS 84 
                                   6******************************************************************************** PP

                        DUF260  77 vgvilklqqqleqlkaelallke 99 
                                   vg+++++q++ +q+++e++l +e
  Zjn_sc00005.1.g02830.1.sm.mk  85 VGLLWSGQWHACQAAVEAVLKGE 107
                                   ****************9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.4823109IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-234103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSDGCT IRPCLQWIKA PEAQANATVF LAKFYGRAGL LNLLAAAGPD  60
GPAAVFRSLL YEACGRIVNP VYGSVGLLWS GQWHACQAAV EAVLKGEPVV RVAANSASSA  120
EHPETEATPP LSARAACDIR HVGAKDRDAS AAAAAAAVAD LLRVSRAGRT KFKRASSSSI  180
TSKTKPAVVG ASKPDNSRAS PRPSTPTQEV RDPVVGLGSG DELDDARALS HREASAGSHQ  240
HLDDHCDVAA AQDGSSEDTE AEAGSHVSQA EEHHSHVHAS SQDEDDEEVD LELTLGLEPV  300
AVRHEARSST CNLRRLSAVS ILMG
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547641e-103EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284041e-103KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024310953.19e-99LOB domain-containing protein 42-like
TrEMBLI1IL922e-97I1IL92_BRADI; Uncharacterized protein
STRINGBRADI4G16740.13e-98(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.13e-55LOB domain-containing protein 40