 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Zjn_sc00005.1.g02740.1.sm.mk |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
| Family |
bHLH |
| Protein Properties |
Length: 362aa MW: 39509.7 Da PI: 6.9029 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Zjn_sc00005.1.g02740.1.sm.mk | genome | ZGD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 27.5 | 5.7e-09 | 170 | 212 | 7 | 54 |
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
+ E++RR+r+ +++ L l+P++ +K + a++ A+eYI++L
Zjn_sc00005.1.g02740.1.sm.mk 170 KKEKQRRQRLSEKYTALMLLIPNR-----TKDDRATVISDAIEYIQEL 212
57*********************9.....9****************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 362 aa
Download sequence Send
to blast |
MVIASCRGDR ALCTSSMYHP HCELLMGHDT LDLDAGHPQL TASSVATIPT ELSFQLFDSL 60
DAAAAASQPT VDYFFGGADH QSTVKYEALA PAGSHHATNM LRDYYAMGEQ YLPRTRAGAA 120
LVFGAPDDES AAYMAGAFQC SPLPRPAGSR KRSRAVSGGF HGGLVNGVEK KEKQRRQRLS 180
EKYTALMLLI PNRTKDDRAT VISDAIEYIQ ELGRTVEELT LLVEKKRRRR EQQGDVVDAA 240
PAAVVAGTEA DSSEGEVVAP TPAAVQRQLI RSTYIQRKSK DTFVDVRIVE EEVNIKLTKR 300
RRDGCLAAAS RALDELRLDL VHLSGGKIGD CHIYMFNTKI HPGSSVFASA VASRLIEVVD 360
EY
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcription factor that binds to the E-box-containing promoter regions of the transcription factors TDR and EAT1, activating their expression. May have a role in specifying the cell pattern of the inner anther walls and functioning in meiosis progression. Required for male reproduction (PubMed:24755456). Acts downstream of UDT1 and GAMYB, but upstream of TDR1 and EAT1 in pollen development (PubMed:24894043). {ECO:0000269|PubMed:24755456, ECO:0000269|PubMed:24894043}. |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | BT064392 | 0.0 | BT064392.1 Zea mays full-length cDNA clone ZM_BFc0164O20 mRNA, complete cds. |
| GenBank | BT064573 | 0.0 | BT064573.1 Zea mays full-length cDNA clone ZM_BFc0184C05 mRNA, complete cds. |
| GenBank | BT068906 | 0.0 | BT068906.1 Zea mays full-length cDNA clone ZM_BFc0190J24 mRNA, complete cds. |
| GenBank | EU965087 | 0.0 | EU965087.1 Zea mays clone 283712 DNA binding protein mRNA, complete cds. |
| GenBank | EU968490 | 0.0 | EU968490.1 Zea mays clone 321358 mRNA sequence. |
