PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g02400.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

TALE

Protein Properties

Length: 161aa MW: 18515 Da PI: 6.7786

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g02400.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.1	5.2e-07	101	128	28	55
HHHHHHHHHCTS-HHHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRake 55 e++ +LA+ +gL+++q+ +WF N+R ++ Zjn_sc00005.1.g02400.1.am.mk 101 EDKVRLASMTGLDTKQINNWFINQRKRH 128 67889********************985 PP
2	ELK	34.3	5e-12	35	56	1	22
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELK++Ll+KYsg+L+ L++EF+ Zjn_sc00005.1.g02400.1.am.mk 35 ELKEMLLKKYSGCLSRLRSEFL 56 9********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51213	10.423	35	55	IPR005539	ELK domain
SMART	SM01188	3.6E-6	35	56	IPR005539	ELK domain
Pfam	PF03789	5.9E-9	35	56	IPR005539	ELK domain
SuperFamily	SSF46689	4.28E-15	57	140	IPR009057	Homeodomain-like
SMART	SM00389	4.1E-5	57	135	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.5E-25	60	133	IPR009057	Homeodomain-like
CDD	cd00086	8.46E-10	67	132	No hit	No description
Pfam	PF05920	5.0E-10	75	127	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	9.556	100	131	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	106	129	IPR017970	Homeobox, conserved site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MPDEMIGSSE DDQCSGDTDV ADVGQEHSSR LADHELKEML LKKYSGCLSR LRSEFLKKRK 60 KGKLPKDARL VLLDWWNTHY RWPYPTVDAE HCIFCHCNME EDKVRLASMT GLDTKQINNW 120 FINQRKRHWK PSEDMRFALM EGVAGSSSGT TLYFDAGTIG P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	50	59	LRSEFLKKRK
2	56	60	KKRKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693}.
UniProt	Probable transcription factor that may be involved in shoot formation during embryogenesis. {ECO:0000269\|PubMed:10080693, ECO:0000269\|PubMed:10488233}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EU966118	1e-59	EU966118.1 Zea mays clone 291871 homeobox protein OSH1 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002455513.1	6e-86	homeobox protein knotted-1-like 1
Refseq	XP_004967561.1	5e-86	homeobox protein knotted-1-like 1
Refseq	XP_025817775.1	6e-86	homeobox protein knotted-1-like 1
Swissprot	A2Y007	2e-82	KNOSA_ORYSI; Homeobox protein knotted-1-like 10
Swissprot	Q7GDL5	2e-82	KNOSA_ORYSJ; Homeobox protein knotted-1-like 10
TrEMBL	A0A1E5WIJ8	1e-84	A0A1E5WIJ8_9POAL; Homeobox protein knotted-1-like 1
TrEMBL	A0A2S3HWH0	1e-84	A0A2S3HWH0_9POAL; Uncharacterized protein
TrEMBL	A0A2T7DNB1	1e-84	A0A2T7DNB1_9POAL; Uncharacterized protein
TrEMBL	A0A368R0G5	1e-84	A0A368R0G5_SETIT; Uncharacterized protein
TrEMBL	C5XI60	1e-84	C5XI60_SORBI; Uncharacterized protein
STRING	Sb03g012480.1	2e-85	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1698	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23380.1	4e-38	KNOTTED1-like homeobox gene 6

Publications ? help Back to Top
Ito Y,Eiguchi M,Kurata N KNOX homeobox genes are sufficient in maintaining cultured cells in an undifferentiated state in rice. Genesis, 2001. 30(4): p. 231-8 [PMID:11536429] Postma-Haarsma AD, et al. Developmental regulation and downstream effects of the knox class homeobox genes Oskn2 and Oskn3 from rice. Plant Mol. Biol., 2002. 48(4): p. 423-41 [PMID:11908517] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Kuijt SJ, et al. Different subcellular localization and trafficking properties of KNOX class 1 homeodomain proteins from rice. Plant Mol. Biol., 2004. 55(6): p. 781-96 [PMID:15604716] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chu H, et al. A CLE-WOX signalling module regulates root meristem maintenance and vascular tissue development in rice. J. Exp. Bot., 2013. 64(17): p. 5359-69 [PMID:24043854] Kuijt SJ, et al. Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors. Plant Physiol., 2014. 164(4): p. 1952-66 [PMID:24532604] Coudert Y, et al. Identification of CROWN ROOTLESS1-regulated genes in rice reveals specific and conserved elements of postembryonic root formation. New Phytol., 2015. 206(1): p. 243-54 [PMID:25442012] Xu Y, et al. OsARID3, an AT-rich Interaction Domain-containing protein, is required for shoot meristem development in rice. Plant J., 2015. 83(5): p. 806-17 [PMID:26121094] Kir G, et al. RNA Interference Knockdown of BRASSINOSTEROID INSENSITIVE1 in Maize Reveals Novel Functions for Brassinosteroid Signaling in Controlling Plant Architecture. Plant Physiol., 2015. 169(1): p. 826-39 [PMID:26162429]