PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00005.1.g02290.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB_related | ||||||||
Protein Properties | Length: 203aa MW: 22479.5 Da PI: 9.3706 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.6e-18 | 107 | 154 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +grWT+eEde+l++++k++G g+W++ ++ g+ R++k+c++rw +yl Zjn_sc00005.1.g02290.1.sm.mk 107 KGRWTKEEDEILARYIKEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 154 79******************************99************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-23 | 98 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 22.842 | 102 | 158 | IPR017930 | Myb domain |
SMART | SM00717 | 1.0E-13 | 106 | 156 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 107 | 154 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.01E-22 | 108 | 181 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.88E-13 | 109 | 154 | No hit | No description |
PROSITE profile | PS50090 | 3.95 | 155 | 203 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-8 | 158 | 181 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 203 aa Download sequence Send to blast |
MQPESGDYPF APTHPHRSVP NNATVDFSPP NCAVCIFTQE PDPTSSSSQL SVPLSLCRAQ 60 AHKKPQLFAV GSGDPSSSSL NLSSSPFSLK QRGMGRAPCC EKVGLKKGRW TKEEDEILAR 120 YIKEHGEGSW RSLPKNAGLL RCGKSCRLRW INYLRADLKR GNISEEEDEM IMKLHATLGN 180 RESNTSFAFS MKTSGKTQTL VHR |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 7e-13 | 105 | 181 | 5 | 80 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF521880 | 9e-98 | AF521880.1 Zea mays R2R3 Myb transcription factor MYB-IF35 mRNA, complete cds. | |||
GenBank | BT039901 | 9e-98 | BT039901.1 Zea mays full-length cDNA clone ZM_BFc0050D21 mRNA, complete cds. | |||
GenBank | BT063308 | 9e-98 | BT063308.1 Zea mays full-length cDNA clone ZM_BFc0051B20 mRNA, complete cds. | |||
GenBank | BT088200 | 9e-98 | BT088200.1 Zea mays full-length cDNA clone ZM_BFc0061H17 mRNA, complete cds. | |||
GenBank | HQ858721 | 9e-98 | HQ858721.1 Zea mays clone UT1188 MYB-IF35 transcription factor mRNA, partial cds. | |||
GenBank | HQ858768 | 9e-98 | HQ858768.1 Zea mays clone UT1749 MYB transcription factor mRNA, partial cds. |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP116 | 37 | 448 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 7e-49 | myb domain protein 12 |