PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00005.1.g01880.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Trihelix

Protein Properties

Length: 500aa MW: 54095.6 Da PI: 6.6389

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00005.1.g01880.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	63.7	4.3e-20	121	241	1	86
trihelix 1 rWtkqevlaLiearremeerlr...rgk................................lkkplWeevskkmrergfers 46 +Wt+ +v++Li ++ +++++ + + + +kk++W++vs++m++ gf +s Zjn_sc00005.1.g01880.1.am.mk 121 KWTDAMVRLLISVVYSVGDDGEglaA-SagggaggkasagphgksgssashghghaaaqqQKKGKWKSVSRAMMDNGFLVS 200 69999999999998855555442211.134455555556666666666666667777777******************* PP trihelix 47 pkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 p+qC++k+++lnkryk++ + +++ +++++++++++d ++ Zjn_sc00005.1.g01880.1.am.mk 201 PQQCEDKFNDLNKRYKRVVDLLGRGrACRVVENHALLDTID 241 ******************99967*****9999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-16	119	267	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010629	Biological Process	negative regulation of gene expression
GO:1900037	Biological Process	regulation of cellular response to hypoxia
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MERGDGGMAS RGGGVVGSAA MLGLDMHLAP QQMHQVAFQQ QPDQHHQVGG GGGGFQLQQP 60 APARHQQQPP SFSPYSTTSS RVVTATASHD EEMAGNGCGG KGGAVQQQQG GTAGCPWTRM 120 KWTDAMVRLL ISVVYSVGDD GEGLAASAGG GAGGKASAGP HGKSGSSASH GHGHAAAQQQ 180 KKGKWKSVSR AMMDNGFLVS PQQCEDKFND LNKRYKRVVD LLGRGRACRV VENHALLDTI 240 DELTPKAKDE ARKLLSSKHL FFREMCAYHN SGASHLPPHA AGAGVDAAAC LHHPSPAPMA 300 AAALSAARLG TKDLSVDADD DSEDGVSNNE DDDENDYDED EDGHMYPNQR LHHQHNNHRG 360 KRGRGADDSA AGEDFEDDEA GWKRARTAPG EQSAAVQQLQ SELASATAAD PQAAKSWVRR 420 RVVEVEEQQV TLDWRAHQLE RQRLKWERFR ANKERDMERA RLRNDRLRLD GQRMLLMLRH 480 GDLELEMAEA NSSSVDHHPN

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MERGDGGMAS RGGGVVGSAA MLGLDMHLAP QQMHQVAFQQ QPDQHHQVGG GGGGFQLQQP  60
APARHQQQPP SFSPYSTTSS RVVTATASHD EEMAGNGCGG KGGAVQQQQG GTAGCPWTRM  120
KWTDAMVRLL ISVVYSVGDD GEGLAASAGG GAGGKASAGP HGKSGSSASH GHGHAAAQQQ  180
KKGKWKSVSR AMMDNGFLVS PQQCEDKFND LNKRYKRVVD LLGRGRACRV VENHALLDTI  240
DELTPKAKDE ARKLLSSKHL FFREMCAYHN SGASHLPPHA AGAGVDAAAC LHHPSPAPMA  300
AAALSAARLG TKDLSVDADD DSEDGVSNNE DDDENDYDED EDGHMYPNQR LHHQHNNHRG  360
KRGRGADDSA AGEDFEDDEA GWKRARTAPG EQSAAVQQLQ SELASATAAD PQAAKSWVRR  420
RVVEVEEQQV TLDWRAHQLE RQRLKWERFR ANKERDMERA RLRNDRLRLD GQRMLLMLRH  480
GDLELEMAEA NSSSVDHHPN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008655870.1	1e-169	uncharacterized protein LOC103635104
TrEMBL	A0A3L6DT84	1e-167	A0A3L6DT84_MAIZE; Uncharacterized protein
STRING	GRMZM2G305362_P01	1e-168	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11944	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	4e-49	sequence-specific DNA binding transcription factors