PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g14190.1.sm.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

C2H2

Protein Properties

Length: 431aa MW: 47113.2 Da PI: 8.424

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g14190.1.sm.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.9	4.5e-07	178	200	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +CpdCg+ F r+++L+ H++ H Zjn_sc00004.1.g14190.1.sm.mk 178 PCPDCGEIFVRQESLQMHQSIrH 200 7******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	3.8E-4	176	196	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	9.141	177	201	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	177	200	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	6.19E-15	202	421	No hit	No description
Gene3D	G3DSA:3.90.228.10	4.7E-10	205	419	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 431 aa Download sequence Send to blast
MVEPAAARNS TATKKSKVKQ RQCTEPPPES PSHRLVALKS LFSCRNSHGQ APDSSCKGTS 60 SKKQQQLACS FAPSICHQLK DNEQVKVKPP TDAAGDPCKR RASVSGSSER RVKKPLSEVS 120 DNKLRQGGGG SSSSSSTGGG SFRAGMQLRR LSGCYECHMV VDPIFRDSSS MRATTICPCP 180 DCGEIFVRQE SLQMHQSIRH AVCELGSDDT SRNIIEIIFQ SSWLKKQSPV CRVERILKVH 240 NSARTLARFE DYREAVKAKA KKKHHPRCTA DGNELLRFHC AALGCALGLH GATHLCGACP 300 TCAIIRDGFF DNSDGIRTMA TSGRAHDAAV PEAGTTEERS RAMLVCRVIA GRVIAGRVKR 360 PSNHHDDDQQ QEQEEVRAEA DGEEEEEYES VAGSAGVYSN MEELLVFNSK AILPCFVVQA 420 MQALRWKQGN E

Sequence ? help Back to Top

Protein Sequence Length: 431 aa Download sequence Send to blast

MVEPAAARNS TATKKSKVKQ RQCTEPPPES PSHRLVALKS LFSCRNSHGQ APDSSCKGTS  60
SKKQQQLACS FAPSICHQLK DNEQVKVKPP TDAAGDPCKR RASVSGSSER RVKKPLSEVS  120
DNKLRQGGGG SSSSSSTGGG SFRAGMQLRR LSGCYECHMV VDPIFRDSSS MRATTICPCP  180
DCGEIFVRQE SLQMHQSIRH AVCELGSDDT SRNIIEIIFQ SSWLKKQSPV CRVERILKVH  240
NSARTLARFE DYREAVKAKA KKKHHPRCTA DGNELLRFHC AALGCALGLH GATHLCGACP  300
TCAIIRDGFF DNSDGIRTMA TSGRAHDAAV PEAGTTEERS RAMLVCRVIA GRVIAGRVKR  360
PSNHHDDDQQ QEQEEVRAEA DGEEEEEYES VAGSAGVYSN MEELLVFNSK AILPCFVVQA  420
MQALRWKQGN E

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824982.1	1e-160	uncharacterized protein LOC112900370
TrEMBL	A0A2S3IBV1	1e-158	A0A2S3IBV1_9POAL; Uncharacterized protein
STRING	GRMZM2G136494_P01	1e-155	(Zea mays)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	2e-68	C2H2-like zinc finger protein