PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g13060.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family Trihelix
Protein Properties Length: 737aa    MW: 80838.4 Da    PI: 9.2009
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g13060.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix56.76.3e-1872153272
                      trihelix   2 WtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 
                                   Wt +e+l Li+a+r +++r   g            +++++W++v ++++ +g+ rs++qC++kw+nl ++ykk+++ e + 
  Zjn_sc00004.1.g13060.1.am.mk  72 WTLHETLILITAKRLDDDRRAGGGvaaasspttprSAEQRWKWVENYCWNHGCLRSQNQCNDKWDNLLRDYKKVRDYEARA 152
                                   **************766666654233344555555*****************************************99986 PP

                      trihelix  72 t 72 
                                   +
  Zjn_sc00004.1.g13060.1.am.mk 153 N 153
                                   4 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.84164139IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-465141IPR009057Homeodomain-like
PfamPF138372.6E-1171151No hitNo description
SuperFamilySSF1014476.02E-5220230No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MSANTVAKPS PMSVSSDPSP SSSSAAAASP LAHFHPHQHT HTHMTPPSPP PAPAPPPPSP  60
ASAPRDYRKG NWTLHETLIL ITAKRLDDDR RAGGGVAAAS SPTTPRSAEQ RWKWVENYCW  120
NHGCLRSQNQ CNDKWDNLLR DYKKVRDYEA RANNPPGSAA AAAAHRSYWS MERHERKDSN  180
LPTNLAPEVF DALSDVLARR AARRGGAAVA ASPPPPLALP PPPPPPPPPP SPPKPLLAHP  240
RPPPPHQLPL PAAMAPAPPT SVSGEEVSWS SESGDDEGSD DDDEPEPKRR RLNRLGSSVV  300
RSATVLARTL VACEEKRERR HRELLDLEER RLRLEEERTE VRRQGFAGII SAVNSLSSAI  360
HALAASDHRS GDSSRIVMIE EEVLPLESLD LCLSFSGFGF VADGDHMISR APCSLMRSLA  420
RRNSAAAPAV AFLGSPWMWT QSSGRECNYT GCLLPERLPM AVPFRRRASA AQTPSDAEDG  480
VAGGGAGDLS RVGRRVVYAL AAGGGMRTHT QRERERERER EMVEMVWTAA LSASGHDHHH  540
GPGGNMSTLQ SVDVLLARAV GRLRWLVVTE QICGEVIAPG RYKPPAPTWC SRATCCIGSK  600
SLDRSRTDAE YPMPPSPVYT PLHFHFHSTC HVYITALRRL HSDHRPALQK VLVGMQQRVC  660
MQSDQWIRPA RPRMQTCLDD PEVRPKNPNA KESVSRTLEK VSVDLRPLLL ATLRTSREDR  720
VAAAAGTVRC YYHGRRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287291KRRRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448740.21e-111trihelix transcription factor ASR3
TrEMBLA0A1B6PNZ91e-109A0A1B6PNZ9_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32943571
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31310.15e-33Trihelix family protein