PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g12180.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 469aa    MW: 51683.1 Da    PI: 10.0185
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g12180.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.15.2e-093383662755
                           AP2  27 krkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +++r++lg++ tae+Aa+a+++a++ + g
  Zjn_sc00004.1.g12180.1.am.mk 338 RKTRIWLGTYATAEDAARAYDEAARLMSG 366
                                   249*********************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103212.299284374IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-11334375IPR016177DNA-binding domain
SMARTSM003801.5E-7336380IPR001471AP2/ERF domain
PfamPF008476.8E-5337364IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.5E-18338375IPR001471AP2/ERF domain
CDDcd000186.26E-14339376No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MQCALCIRQC TERKKHLTSA VVPPLKQMAT ERRCDARLEA GENRRIVLPV RVTYVAVERG  60
DLIRGVAVEG PLHVLALPWS KRNVAVYSVP CGRITTKPTS TWNDCHRVTA QYVPTLFSRP  120
AGLRLSLSVN APPLAPSIVL PKRGPRPGPP GSIDRSCSAC RPKPNNERVL TDLRFSGRRR  180
RRSRLISSGH LKRVAFLAAD KASSRMSTCR RKSRQLGRDC PTGRRHECAR DCPSSRPMMS  240
QASIVEARHR AQFRASFSRS GSETADRRHA EAAEVQGSEA EALGLLGLRD PPPAPVNFSS  300
FRVPAFLTWH ACLPRCMRDT MIFCLSVCVS LLSLCWCRKT RIWLGTYATA EDAARAYDEA  360
ARLMSGPAAR TNFPATATGF LSPAMRAKLE KCCTESSTTP QQDGAIANAS GTAERGARQK  420
GDDDAKENKD DRGEDHIDEM ISELTYYGPF EIHQHPSTTT TTATTSPLD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176184GRRRRRSRL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6064466e-39AL606446.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F16, complete sequence.
GenBankAL6066856e-39AL606685.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13, complete sequence.
GenBankAP0149606e-39AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126126e-39CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8551366e-39CR855136.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0147J19, complete sequence.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.15e-13ERF family protein