PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g11200.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

bZIP

Protein Properties

Length: 486aa MW: 54413.1 Da PI: 6.8564

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g11200.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.8	3.7e-11	113	155	4	46
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 k+ rr+++NReAAr+sR+RKka+i++Le+ +L++ + L+ Zjn_sc00004.1.g11200.1.sm.mkhc 113 EKAMRRLAQNREAARKSRLRKKAYIQQLETSRIKLSQLEQNLQ 155 5889*************************98888877766555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.9E-7	110	174	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.082	112	156	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.2E-8	114	155	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.9E-8	114	160	No hit	No description
CDD	cd14708	9.90E-21	114	163	No hit	No description
SuperFamily	SSF57959	2.18E-7	115	160	No hit	No description
PROSITE pattern	PS00036	0	117	132	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	1.0E-23	200	274	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009409	Biological Process	response to cold
GO:0042742	Biological Process	defense response to bacterium
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 486 aa Download sequence Send to blast
MMEFYPGYLE DHLNIHKLSI GSGDAASPPE YMTSASPQFA APIRMGMYER PAPTAPIGMW 60 SNEPFKVDSG GQATSASTIM EADNKFDAPL EDVPQVSLEP ARSTDQETSK PPEKAMRRLA 120 QNREAARKSR LRKKAYIQQL ETSRIKLSQL EQNLQQARQQ SVYANGNLGD SKLGFSGSVD 180 PGVAAFEIEY SHWVDEQNRH TAELRNALLV QTTSDLEMRM LVETGLKNYE HLFCIKTIAA 240 NSDVFYIMSG VWRTPVERFF IWIGGFRPSE VLKVPGCPCY CILTPQLEPL TEPQRAFVCG 300 LQQTSTQAED ALLQGMEKLQ QNVTETLAGV DPFASSEVYM LQMASAVDKL KELVGFVNQA 360 DHLRRTTLQE MHKILTTRQA AKGLLVLGDY FQRLRALSQL WAARPRESAI SVVNIRLAGV 420 TQFTDEKPEL AMPVHAFLPR TMDQATPIGQ PPSMHGRVQR VDAQFQGVIA QVEPRPTSRP 480 GFMRWH

Sequence ? help Back to Top

Protein Sequence Length: 486 aa Download sequence Send to blast

MMEFYPGYLE DHLNIHKLSI GSGDAASPPE YMTSASPQFA APIRMGMYER PAPTAPIGMW  60
SNEPFKVDSG GQATSASTIM EADNKFDAPL EDVPQVSLEP ARSTDQETSK PPEKAMRRLA  120
QNREAARKSR LRKKAYIQQL ETSRIKLSQL EQNLQQARQQ SVYANGNLGD SKLGFSGSVD  180
PGVAAFEIEY SHWVDEQNRH TAELRNALLV QTTSDLEMRM LVETGLKNYE HLFCIKTIAA  240
NSDVFYIMSG VWRTPVERFF IWIGGFRPSE VLKVPGCPCY CILTPQLEPL TEPQRAFVCG  300
LQQTSTQAED ALLQGMEKLQ QNVTETLAGV DPFASSEVYM LQMASAVDKL KELVGFVNQA  360
DHLRRTTLQE MHKILTTRQA AKGLLVLGDY FQRLRALSQL WAARPRESAI SVVNIRLAGV  420
TQFTDEKPEL AMPVHAFLPR TMDQATPIGQ PPSMHGRVQR VDAQFQGVIA QVEPRPTSRP  480
GFMRWH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00502	DAP	Transfer from AT5G10030	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025823702.1	0.0	transcription factor TGAL6-like isoform X1
Refseq	XP_025823703.1	0.0	transcription factor TGAL6-like isoform X1
Swissprot	A0A0P0WFC8	0.0	TGAL6_ORYSJ; Transcription factor TGAL6
TrEMBL	A0A0A9D9I6	0.0	A0A0A9D9I6_ARUDO; Uncharacterized protein
STRING	Pavir.Gb00388.1.p	0.0	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3571	38	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10030.2	1e-120	TGACG motif-binding factor 4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Okada A, et al. OsTGAP1, a bZIP transcription factor, coordinately regulates the inductive production of diterpenoid phytoalexins in rice. J. Biol. Chem., 2009. 284(39): p. 26510-8 [PMID:19635799] Okada K The biosynthesis of isoprenoids and the mechanisms regulating it in plants. Biosci. Biotechnol. Biochem., 2011. 75(7): p. 1219-25 [PMID:21737944] Yamane H Biosynthesis of phytoalexins and regulatory mechanisms of it in rice. Biosci. Biotechnol. Biochem., 2013. 77(6): p. 1141-8 [PMID:23748776] Miyamoto K, et al. Identification of target genes of the bZIP transcription factor OsTGAP1, whose overexpression causes elicitor-induced hyperaccumulation of diterpenoid phytoalexins in rice cells. PLoS ONE, 2014. 9(8): p. e105823 [PMID:25157897] Miyamoto K, et al. Overexpression of the bZIP transcription factor OsbZIP79 suppresses the production of diterpenoid phytoalexin in rice cells. J. Plant Physiol., 2015. 173: p. 19-27 [PMID:25462074]