PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g10610.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HD-ZIP
Protein Properties Length: 620aa    MW: 68097 Da    PI: 6.2124
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g10610.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.24.5e-2172128157
                                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
                        Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                                     +++ +++t++q++eLe++F+++++p+ ++r+eL+++lgL+  qVk+WFqN+R+++k+
  Zjn_sc00004.1.g10610.1.sm.mkhc  72 KKRYHRHTQHQIQELEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKN 128
                                     688999************************************************995 PP
2START204.44.7e-642704901206
                                     HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGG CS
                           START   1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddke 70 
                                     ela +a++elv++a+++ep+W         +  ++e+   f+++ +      ++ea+r+s+vv+m++a lve+l+d++ 
  Zjn_sc00004.1.g10610.1.sm.mkhc 270 ELAVTAMEELVRMAQVDEPLWNAPGldgsAETLNEEYAGMFPQGLGpkqygLKSEASRDSAVVIMTHASLVEILMDVN- 347
                                     57899****************98778887666788999999887779999****************************. PP

                                     CT-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--. CS
                           START  71 qWdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe 138
                                     q+ + +     +a+tlev+s+g      galq+m+ e+q++splvp R+++fvRy++q ++g+w++vdvS+ds ++ + 
  Zjn_sc00004.1.g10610.1.sm.mkhc 348 QYATVFSsivsRAATLEVLSTGvagnynGALQVMSVEFQVPSPLVPtRESYFVRYCKQNSDGTWAVVDVSLDSLRPSS- 425
                                     88888888888****************************************************************965. PP

                                     -TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                           START 139 sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                                        v +++++pSg+li++++ng+skvtwvehv++++r++h ++++lv+sgla+ga++wv tl+rqce+
  Zjn_sc00004.1.g10610.1.sm.mkhc 426 ---VLKCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRSVHDIYKPLVNSGLAFGARRWVGTLDRQCER 490
                                     ...8**************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.5E-2355113IPR009057Homeodomain-like
SuperFamilySSF466891.04E-2058129IPR009057Homeodomain-like
PROSITE profilePS5007117.44369129IPR001356Homeobox domain
SMARTSM003892.6E-2070133IPR001356Homeobox domain
CDDcd000863.81E-2072130No hitNo description
PfamPF000461.1E-1872127IPR001356Homeobox domain
PROSITE patternPS000270104127IPR017970Homeobox, conserved site
Gene3DG3DSA:1.10.10.605.8E-4114156IPR009057Homeodomain-like
PROSITE profilePS5084842.711261493IPR002913START domain
SuperFamilySSF559617.69E-35262492No hitNo description
CDDcd088752.55E-122265489No hitNo description
SMARTSM002347.2E-59270490IPR002913START domain
PfamPF018521.3E-53271490IPR002913START domain
Gene3DG3DSA:3.30.530.203.7E-6330486IPR023393START-like domain
SuperFamilySSF559619.62E-9511596No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
PNMLDNQQFQ QALQQHLLEP IPATTAESGD NMMRGRASDP LGDEFESKSG SENADGVSVD  60
DLQDPSQPPN KKKRYHRHTQ HQIQELEAFF KECPHPDDKQ RKELSRELGL EPLQVKFWFQ  120
NKRTQMKNQH ERQENSQLRA ENEKLRAENM RYKEALSSAS CPNCGGPAAL GEMSFDEHHL  180
RVENARLREE IDRISAIAAK YVGKPMVSFP VMSSPLAITR AGASPLDLGV GAAYGAGAAN  240
IFGGVAAGAG AGELLRGALH SDADKPVIVE LAVTAMEELV RMAQVDEPLW NAPGLDGSAE  300
TLNEEYAGMF PQGLGPKQYG LKSEASRDSA VVIMTHASLV EILMDVNQYA TVFSSIVSRA  360
ATLEVLSTGV AGNYNGALQV MSVEFQVPSP LVPTRESYFV RYCKQNSDGT WAVVDVSLDS  420
LRPSSVLKCR RRPSGCLIQE MPNGYSKVTW VEHVEVDDRS VHDIYKPLVN SGLAFGARRW  480
VGTLDRQCER LASVMASNIP TSDIGVITST EGRKSMLKLA ERMVISFCGG VTASAAHQWT  540
TLSGSGAEDV RVMTRKSVDD PGRPPGIVLN AATSFWLPVP PKRVFDFLRD ESSRSEASIR  600
SPCMLMIECI HPYIHAHTRY
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0672590.0BT067259.1 Zea mays full-length cDNA clone ZM_BFb0357I11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004976894.10.0homeobox-leucine zipper protein ROC2
SwissprotQ0J9X20.0ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBLA0A1E5WHW10.0A0A1E5WHW1_9POAL; Homeobox-leucine zipper protein ROC2
STRINGSi009409m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79938147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21750.20.0HD-ZIP family protein
Publications ? help Back to Top
  1. Chou IT,Gasser CS
    Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins.
    Plant Mol. Biol., 1997. 35(6): p. 873-92
    [PMID:9426607]