PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g10240.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family NAC
Protein Properties Length: 295aa    MW: 32710.8 Da    PI: 7.4138
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g10240.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.88.6e-53121431128
                             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74 
                                     lppGfrFhP+d+elv +yL +k+++k            + +vd++k+ePwdLp+++  +++ewyfFs +d+kyatg+r+
  Zjn_sc00004.1.g10240.1.sm.mkhc  12 LPPGFRFHPRDDELVLDYLYHKLSSKGggggaY-SGINMVDVDLNKCEPWDLPEEACVGSREWYFFSLHDRKYATGQRT 89 
                                     79**********************999888632.3245999************87777899****************** PP

                             NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                                     nrat+sgyWkatgkd+++ +++g++vg++ktLvfy+grap+g+kt+Wvmhe+r+
  Zjn_sc00004.1.g10240.1.sm.mkhc  90 NRATRSGYWKATGKDRPISRRRGAVVGMRKTLVFYQGRAPRGRKTEWVMHEFRV 143
                                     ****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-572169IPR003441NAC domain
PROSITE profilePS5100554.92112169IPR003441NAC domain
PfamPF023654.7E-2613143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MMSSISMVEA RLPPGFRFHP RDDELVLDYL YHKLSSKGGG GGAYSGINMV DVDLNKCEPW  60
DLPEEACVGS REWYFFSLHD RKYATGQRTN RATRSGYWKA TGKDRPISRR RGAVVGMRKT  120
LVFYQGRAPR GRKTEWVMHE FRVEGPAIAD AVAGSPLTED WVLCRVFYRS RTVTTRPAPA  180
DVEAGSPANE LITLPMPHAP PVDAYLLALD HAPAATIGGF YYQQDDDGGL PAAQGKTLSN  240
FRELLTSMVE RDGGAAAKPE LHQHHHHHQD WTEAAYAAQQ SAVAAQAWNP FLNSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-47916712166Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9687521e-119EU968752.1 Zea mays clone 323927 NAC domain-containing protein 21/22 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824710.11e-131NAC domain-containing protein 21/22-like
SwissprotQ84TE62e-72NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2S3IAF01e-130A0A2S3IAF0_9POAL; Uncharacterized protein
STRINGSi010680m1e-129(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP101237138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56010.27e-75NAC domain containing protein 1
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]