PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00004.1.g09180.1.sm.mkhc | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 232aa MW: 27655.1 Da PI: 9.5262 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 60.5 | 4.1e-19 | 15 | 79 | 1 | 64 |
trihelix 1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykki 64 +W +qe+++Li+ar ++e++ + ++++k+ We+v++ +rerg++r++ qCk+kw+nl +ryk+ Zjn_sc00004.1.g09180.1.sm.mkhc 15 QWGEQETRELIAARGKIEREAVTaRRSAKTMWEAVAAWLRERGYRRTADQCKCKWKNLVNRYKRQ 79 7*****************9887626799***********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.4E-15 | 14 | 79 | No hit | No description |
CDD | cd12203 | 1.07E-15 | 14 | 78 | No hit | No description |
PROSITE profile | PS50090 | 7.317 | 16 | 73 | IPR017877 | Myb-like domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MEVGGVGGRD ERVPQWGEQE TRELIAARGK IEREAVTARR SAKTMWEAVA AWLRERGYRR 60 TADQCKCKWK NLVNRYKRQL LESETGATVK KKLKRPSGNQ TSEESDDEED CGEESEGDKP 120 MHDRKRRADD KKQQPRRISE KSRVGTSSIH DLLQDFLVQQ QRIDMQWREM TEKRAQERLL 180 FEQEWRQTMQ KLEQERLMLE RSWMEREEQR RMREEARAEK RDALLTTLGA FN |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184852 | 1e-63 | KF184852.1 Saccharum hybrid cultivar R570 clone BAC 020L15 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002448463.1 | 1e-104 | trihelix transcription factor GT-3b | ||||
TrEMBL | A0A059Q3B0 | 1e-110 | A0A059Q3B0_9POAL; Transcription factor | ||||
STRING | Pavir.J40572.1.p | 1e-104 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10688 | 30 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G38250.1 | 6e-17 | Trihelix family protein |