PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Zjn_sc00004.1.g08840.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 526aa MW: 58052.6 Da PI: 8.5687 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 49.5 | 1e-15 | 178 | 225 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l+ ++++ G +W++ ++ g+ R++k+c++rw +yl Zjn_sc00004.1.g08840.1.am.mk 178 KGSWTPEEDMRLIAYIQKCGHANWRALPKQAGLLRCGKSCRLRWINYL 225 799*****************************99************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.8e-17 | 231 | 276 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l Zjn_sc00004.1.g08840.1.am.mk 231 RGNFTVEEEESIIKLHAMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 276 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 7.5E-23 | 169 | 228 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.467 | 173 | 225 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.01E-29 | 175 | 272 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.7E-12 | 177 | 227 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-14 | 178 | 225 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.51E-10 | 180 | 225 | No hit | No description |
PROSITE profile | PS51294 | 24.639 | 226 | 280 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-26 | 229 | 279 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.2E-14 | 230 | 278 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 231 | 276 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.55E-11 | 233 | 276 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 526 aa Download sequence Send to blast |
MSHEFYSRHQ AMNTCPIAAK ATRSPATPGH PAQALRWASK PPLPQPRPHE AARDRGRRAR 60 CPRRPCRGNQ RTRNAGRTLR FVGNSRGLQK APKREAGSIV EFGEAGLRRW VRACREGDTA 120 AACVTCRTRQ RTRREPPPRA RHRRREQSIT RRRSLRCLWP GLMGKGRAPC CAKVGLNKGS 180 WTPEEDMRLI AYIQKCGHAN WRALPKQAGL LRCGKSCRLR WINYLRPDLK RGNFTVEEEE 240 SIIKLHAMLG NKWSKIAACL PGRTDNEIKN VWNTHLKKRV APCGEQEHTA KKKKKKNSAG 300 AEATVPSPSP SPASSTTTTT NCSSGDSGEQ QSNASCKEPD ELDLKTLNIP TLDTAGFDFD 360 FDFDLDMLVD HPAPELHHPS LSVPTSPCAS STSPPAPATN VDGLLALPEI DIDIDQELWS 420 IIDGDGACSF TETPAPPCHG NATEPDAATT SREEDGKEWW LENLERELGL WGPVEDYQCP 480 AGPLGLAEPD LPPMVQEQDP VTCYFQAGST AVPLQGPELS SNQMTL |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 7e-26 | 176 | 280 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 276 | 295 | KKRVAPCGEQEHTAKKKKKK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT070145 | 1e-139 | BT070145.1 Zea mays full-length cDNA clone ZM_BFc0138F01 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824709.1 | 1e-151 | myb-related protein Zm1-like | ||||
Swissprot | P20024 | 1e-102 | MYB1_MAIZE; Myb-related protein Zm1 | ||||
TrEMBL | A0A2S3I9V4 | 1e-149 | A0A2S3I9V4_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Gb00587.1.p | 1e-151 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2154 | 37 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G79180.1 | 2e-66 | myb domain protein 63 |
Publications ? help Back to Top | |||
---|---|---|---|
|