PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g08840.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 526aa    MW: 58052.6 Da    PI: 8.5687
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g08840.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.51e-15178225148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   +g+WT+eEd +l+ ++++ G  +W++ ++  g+ R++k+c++rw +yl
  Zjn_sc00004.1.g08840.1.am.mk 178 KGSWTPEEDMRLIAYIQKCGHANWRALPKQAGLLRCGKSCRLRWINYL 225
                                   799*****************************99************97 PP

2Myb_DNA-binding52.79.8e-17231276148
                                   TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                   rg++T eE+e +++++++lG++ W++Ia++++ gRt++++k+ w+++l
  Zjn_sc00004.1.g08840.1.am.mk 231 RGNFTVEEEESIIKLHAMLGNK-WSKIAACLP-GRTDNEIKNVWNTHL 276
                                   89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-23169228IPR009057Homeodomain-like
PROSITE profilePS5129414.467173225IPR017930Myb domain
SuperFamilySSF466891.01E-29175272IPR009057Homeodomain-like
SMARTSM007171.7E-12177227IPR001005SANT/Myb domain
PfamPF002492.3E-14178225IPR001005SANT/Myb domain
CDDcd001675.51E-10180225No hitNo description
PROSITE profilePS5129424.639226280IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-26229279IPR009057Homeodomain-like
SMARTSM007171.2E-14230278IPR001005SANT/Myb domain
PfamPF002494.6E-15231276IPR001005SANT/Myb domain
CDDcd001675.55E-11233276No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MSHEFYSRHQ AMNTCPIAAK ATRSPATPGH PAQALRWASK PPLPQPRPHE AARDRGRRAR  60
CPRRPCRGNQ RTRNAGRTLR FVGNSRGLQK APKREAGSIV EFGEAGLRRW VRACREGDTA  120
AACVTCRTRQ RTRREPPPRA RHRRREQSIT RRRSLRCLWP GLMGKGRAPC CAKVGLNKGS  180
WTPEEDMRLI AYIQKCGHAN WRALPKQAGL LRCGKSCRLR WINYLRPDLK RGNFTVEEEE  240
SIIKLHAMLG NKWSKIAACL PGRTDNEIKN VWNTHLKKRV APCGEQEHTA KKKKKKNSAG  300
AEATVPSPSP SPASSTTTTT NCSSGDSGEQ QSNASCKEPD ELDLKTLNIP TLDTAGFDFD  360
FDFDLDMLVD HPAPELHHPS LSVPTSPCAS STSPPAPATN VDGLLALPEI DIDIDQELWS  420
IIDGDGACSF TETPAPPCHG NATEPDAATT SREEDGKEWW LENLERELGL WGPVEDYQCP  480
AGPLGLAEPD LPPMVQEQDP VTCYFQAGST AVPLQGPELS SNQMTL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C7e-2617628025128MYB TRANSFORMING PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1276295KKRVAPCGEQEHTAKKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates positively genes involved in anthocyanin biosynthesis such as A1. {ECO:0000269|PubMed:7920701}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0701451e-139BT070145.1 Zea mays full-length cDNA clone ZM_BFc0138F01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025824709.11e-151myb-related protein Zm1-like
SwissprotP200241e-102MYB1_MAIZE; Myb-related protein Zm1
TrEMBLA0A2S3I9V41e-149A0A2S3I9V4_9POAL; Uncharacterized protein
STRINGPavir.Gb00587.1.p1e-151(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21543798
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79180.12e-66myb domain protein 63
Publications ? help Back to Top
  1. Franken P,Schrell S,Peterson PA,Saedler H,Wienand U
    Molecular analysis of protein domain function encoded by the myb-homologous maize genes C1, Zm 1 and Zm 38.
    Plant J., 1994. 6(1): p. 21-30
    [PMID:7920701]