PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g08810.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 391aa    MW: 42749.1 Da    PI: 7.4561
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g08810.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.77.2e-1564113148
                                     TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 
                                     +g+WT+eEd  lv  ++++Gg+  +W+  ++  g++R++k+c++rw +yl
  Zjn_sc00004.1.g08810.1.sm.mkhc  64 KGPWTEEEDRTLVGHIQKHGGHvsSWRNLPKAAGLNRCGKSCRLRWTNYL 113
                                     79**********************************************97 PP
2Myb_DNA-binding54.72.4e-17119163147
                                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
                 Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                     rg++T +E+ l++ ++++lG++ W+tIa ++  gRt++++k++w+++
  Zjn_sc00004.1.g08810.1.sm.mkhc 119 RGNFTDDEERLIIALHAELGNK-WSTIATHLE-GRTDNEIKNYWNTH 163
                                     89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.34559113IPR017930Myb domain
SuperFamilySSF466899.71E-2861160IPR009057Homeodomain-like
SMARTSM007171.9E-963115IPR001005SANT/Myb domain
PfamPF002492.4E-1364113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.7E-2265120IPR009057Homeodomain-like
CDDcd001673.97E-866113No hitNo description
PROSITE profilePS5129427.549114168IPR017930Myb domain
SMARTSM007174.0E-16118166IPR001005SANT/Myb domain
PfamPF002493.7E-15119163IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-26121169IPR009057Homeodomain-like
CDDcd001673.87E-12121164No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MQRSITGVLL RYKSRYEPRA TYTSNPSIPA ASPSPSREKR ACRKTSIESM GRSPCCCHDA  60
GVKKGPWTEE EDRTLVGHIQ KHGGHVSSWR NLPKAAGLNR CGKSCRLRWT NYLRPDIKRG  120
NFTDDEERLI IALHAELGNK WSTIATHLEG RTDNEIKNYW NTHIRKKLVR MGVDPVTHQR  180
LPPDDILNGA LASPGGLPGT LLCAAASSFR DLDTALRQAQ ALQLLLQVVG SSSNLTGSAA  240
LLGNYNLPTG NAMLSNVNNS VAPNLQDQMM SIFSPANNRP AAGYYPPCDA GAANFAEQGM  300
AQQCLKSSAP SPSCGSPNGE LAADQYCNTT AALERPAAYT QEAAATGVDL PAPVQTFTDL  360
LEPREMPNMY SLEEDDRLWD WDDMLHSSFH L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-286216825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHF6794321e-163HF679432.1 Saccharum hybrid cultivar Co 86032 mRNA for ScMYB26 protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001105856.11e-121transcription factor MYB2
SwissprotQ9S9Z23e-65MYB93_ARATH; Transcription factor MYB93
TrEMBLQ2A7041e-119Q2A704_MAIZE; MYB transcription factor9
STRINGGRMZM2G081557_P011e-121(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62652955
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.27e-71myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]