PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g07490.1.sm.mkhc

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

Dof

Protein Properties

Length: 369aa MW: 37360.3 Da PI: 8.1371

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g07490.1.sm.mkhc	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.3	4e-39	75	136	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 kekal+cprC stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss Zjn_sc00004.1.g07490.1.sm.mkhc 75 KEKALNCPRCSSTNTKFCYYNNYSLHQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 136 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-30	71	133	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.6E-33	77	133	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.882	79	133	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	81	117	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MDAAPWHQGL GLVKPMEDML MAANAPAGNP SQGSNPNPSA TAPAPSLTPG GALRGGAPAA 60 VPGAGSAERR VRPQKEKALN CPRCSSTNTK FCYYNNYSLH QPRYFCKTCR RYWTEGGSLR 120 NVPVGGGSRK NKRSSSSSAS TSASASVTSS SMASSMGVAS KNPKLTHEGA QDLNLAFPSG 180 LQAPGDFAAF PSLESGNMCN PGGAMTSNGR GVGTGSAVGA LSAMELLRST GGYMPLQVPM 240 QMPGDYAAAG FSFGEFRAPP PPSQSVLGFS LDAHGSAAGT AAAGYGSGAR LQGAPENASR 300 LLFPFEDLKI PVTSGDGEGD AGASGDTGDG NNGHHQFEHG KEQTAGGPGA GHDTPGFWNG 360 MIGGSGTSW

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MDAAPWHQGL GLVKPMEDML MAANAPAGNP SQGSNPNPSA TAPAPSLTPG GALRGGAPAA  60
VPGAGSAERR VRPQKEKALN CPRCSSTNTK FCYYNNYSLH QPRYFCKTCR RYWTEGGSLR  120
NVPVGGGSRK NKRSSSSSAS TSASASVTSS SMASSMGVAS KNPKLTHEGA QDLNLAFPSG  180
LQAPGDFAAF PSLESGNMCN PGGAMTSNGR GVGTGSAVGA LSAMELLRST GGYMPLQVPM  240
QMPGDYAAAG FSFGEFRAPP PPSQSVLGFS LDAHGSAAGT AAAGYGSGAR LQGAPENASR  300
LLFPFEDLKI PVTSGDGEGD AGASGDTGDG NNGHHQFEHG KEQTAGGPGA GHDTPGFWNG  360
MIGGSGTSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that may transactivate seed storage protein genes in developing seeds. {ECO:0000250\|UniProtKB:Q6K537}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001356786.1	1e-140	dof zinc finger protein
Refseq	XP_004976523.1	1e-140	dof zinc finger protein 1 isoform X2
Swissprot	Q9SXG8	1e-129	DOF1_ORYSJ; Dof zinc finger protein 1
TrEMBL	A0A0A9GUS7	1e-156	A0A0A9GUS7_ARUDO; Uncharacterized protein
STRING	Traes_2AL_189D6889B.1	1e-136	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2369	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	6e-46	Dof family protein

Publications ? help Back to Top
Washio K Identification of Dof proteins with implication in the gibberellin-regulated expression of a peptidase gene following the germination of rice grains. Biochim. Biophys. Acta, 2001. 1520(1): p. 54-62 [PMID:11470159]