PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00004.1.g06860.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GRAS | ||||||||
Protein Properties | Length: 700aa MW: 74041.7 Da PI: 4.9233 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 264.7 | 3.1e-81 | 340 | 699 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaal 81 + L+++A+a + g++ a+ +Larl+++ p g +p+ R a++++eAL + l++ + +++ ts+ +++ +laa+ Zjn_sc00004.1.g06860.1.sm.mk 340 LDDLVAAAKAAEVGNFVGARLILARLNQQLPPIGgKPFLRSASCLKEALLTALND-----GNNGSSRLTSPLDVALKLAAY 415 5789*************************777776********************.....56667777777889******* PP GRAS 82 klfsevsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgske 156 k fs++sP+l+f+++ta qa+l+++ ++v iiDfd++ G+QW ++lq+La R+ + p++++T+++s++s++ Zjn_sc00004.1.g06860.1.sm.mk 416 KSFSDISPVLQFANFTATQALLDEITCTtaSCVRIIDFDLGVGGQWSSFLQELAHRRdtggVSLPTFKLTAFVSSASHHPL 496 ***********************98766569***********************9997765569***************** PP GRAS 157 eleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp.gEalaVnlvlqlhrlldesvsleserdevLklvkslsP 236 el+ t+e+L++fA+ lg+pf f+++ +le++++ eL ++ +E +aV+l ++ +l+ +L+lvk+l P Zjn_sc00004.1.g06860.1.sm.mk 497 ELHLTRENLSQFANDLGIPFGFTAI---NLETFDPAELIASTaDEFVAVSLPVSCSIRT---PPLPM----LLQLVKQLAP 567 ************************9...99*****99977777*********9665443...45555....********** PP GRAS 237 kvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317 k+vv +++ d ++ +F ++f+++++ ++ l+dsl+a +++++++k+Er+l++++++++v + r e+++ Wr Zjn_sc00004.1.g06860.1.sm.mk 568 KIVVAIDHGNDQSDLPFSQHFMNCFQSCMFLLDSLDAA-RTDADTASKIERFLIQPRVEDAVLGRR-----RVEKAMAWRT 642 ***********************************998.5777******************98554.....6799****** PP GRAS 318 rleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++aGF pvpls+ a++qa++ll++v+++g++ve+ l l+W++ +Lvs+SaWr Zjn_sc00004.1.g06860.1.sm.mk 643 AFTSAGFVPVPLSNLAEAQADCLLKRVQFRGFHVEKCGTDLALYWQRGELVSISAWR 699 ********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.931 | 313 | 679 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-78 | 340 | 699 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 700 aa Download sequence Send to blast |
MSAAPFIAEG NGISAGSIEA LLCWPADKGG GLVEPTSVLD SGWSPSPPNS TSLMSSSQGG 60 GAADSAGVAA AAASENSERA ASGERSGGGD GRKEEEEEWT GGDLPPVPGT LGVGFNGEEA 120 GWDAMLSDAA AVAGQEQTFL NWILADPSDV EPPALQQQQQ LLGNAAGFGF PASDSPGFSL 180 KHHPGGGASA SDPSSAGARS VSSSKATSTF GLLPTEAALL PPPATTLPFD DGADIKRALH 240 GVPTPNLLLN QHHPMPAASF VMPLPSFPDH HQQPHLPPPP KRHHSMPDNL FLLNNQLPPP 300 LPQCLPFPTL HTAAPFQLQP SLQPPLDAMK TTATAQQQLL DDLVAAAKAA EVGNFVGARL 360 ILARLNQQLP PIGGKPFLRS ASCLKEALLT ALNDGNNGSS RLTSPLDVAL KLAAYKSFSD 420 ISPVLQFANF TATQALLDEI TCTTASCVRI IDFDLGVGGQ WSSFLQELAH RRDTGGVSLP 480 TFKLTAFVSS ASHHPLELHL TRENLSQFAN DLGIPFGFTA INLETFDPAE LIASTADEFV 540 AVSLPVSCSI RTPPLPMLLQ LVKQLAPKIV VAIDHGNDQS DLPFSQHFMN CFQSCMFLLD 600 SLDAARTDAD TASKIERFLI QPRVEDAVLG RRRVEKAMAW RTAFTSAGFV PVPLSNLAEA 660 QADCLLKRVQ FRGFHVEKCG TDLALYWQRG ELVSISAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-23 | 415 | 699 | 80 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824521.1 | 0.0 | scarecrow-like protein 6 | ||||
TrEMBL | A0A2T8IDF8 | 0.0 | A0A2T8IDF8_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Ga01057.1.p | 0.0 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2020 | 37 | 96 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 5e-85 | GRAS family protein |