PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g06220.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 315aa    MW: 34649.5 Da    PI: 7.9693
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g06220.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.93.8e-15741135
                            GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                                    C +Cg+t+TplWR+gp  ++ LCnaCG ++r kg+
  Zjn_sc00004.1.g06220.1.sm.mkhc  7 CCHCGVTSTPLWRNGPADKPVLCNACGSRWRTKGS 41
                                    99**************77777***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004017.8E-8153IPR000679Zinc finger, GATA-type
CDDcd002021.17E-13640No hitNo description
SuperFamilySSF577164.47E-11645No hitNo description
PfamPF003201.1E-12741IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.104.7E-12741IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.385740IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MVKQGPCCHC GVTSTPLWRN GPADKPVLCN ACGSRWRTKG SLANYTPMHR RDDIDDEEPR  60
ASRLRPPTSK PKAQKAKQIT KRTTMENGPF SAQNFRRMGD ADPCNRSSSG SAVSYSESCV  120
PYGAADASEM TGSAQSHAWE SLVPSKKRSC INRPKDSPVE KLAKDLNSIM HEEQFYHLSG  180
SSEDDLLYHR ETPVGSVEIG SGSVLLRNMY SKSLEEESEA SSVPAENKSY VTSESYSGSA  240
SFGVHSGTKE ASNLKSAFER PKRSRLQIED NEKEIEETGE EKNISGLKGI TKPAMKPLKR  300
PHDTHFQSCA GHFDS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001149109.11e-152uncharacterized protein LOC100282731
SwissprotQ8W4H13e-59GAT26_ARATH; GATA transcription factor 26
TrEMBLB4FZE91e-150B4FZE9_MAIZE; C2C2-GATA transcription factor
STRINGGRMZM2G077002_P011e-151(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44243464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17570.34e-64GATA transcription factor 26