PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00004.1.g06160.1.sm.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | Trihelix | ||||||||
Protein Properties | Length: 206aa MW: 22824.2 Da PI: 11.4986 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 28.3 | 4.7e-09 | 21 | 82 | 1 | 66 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 +Wt +e+laL +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + ++ Zjn_sc00004.1.g06160.1.sm.mk 21 CWTPDETLALARAYTARRLAVGREHLTSADWAAVAAAAP----SKTARQCRHKVEKLRRRLRSSRR 82 8*********************************99865....689*************9998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 8.58E-5 | 18 | 72 | IPR009057 | Homeodomain-like |
Pfam | PF13837 | 2.1E-7 | 20 | 82 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-4 | 22 | 73 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.307 | 22 | 74 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MASPSASPRA NGSGRRVPPP CWTPDETLAL ARAYTARRLA VGREHLTSAD WAAVAAAAPS 60 KTARQCRHKV EKLRRRLRSS RRRPCPLLDA IDLLDGPSPP IMSRVKSPSP SRSPSPPPAV 120 SLPSPYSSPA SPPRKRRRDD YGDEYGVSDL VGALRVIGEG FLRAEERRME AARETQRMRM 180 DMALRHLDAQ RRLMEVFVGR IVDALD |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 71 | 77 | KLRRRLR |
2 | 72 | 78 | LRRRLRS |
3 | 133 | 137 | RKRRR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001144478.1 | 2e-86 | uncharacterized protein LOC100277445 | ||||
TrEMBL | B6TUK0 | 6e-85 | B6TUK0_MAIZE; FRIGIDA interacting protein 2 | ||||
STRING | GRMZM2G320827_P01 | 9e-86 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13911 | 20 | 24 |