PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g05740.1.am.mk
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family GATA
Protein Properties Length: 420aa    MW: 44353.5 Da    PI: 7.3565
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g05740.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-18340374135
                          GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                                   Cs+C + kTp+WR gp+g ktLCnaCG+++++ +l
  Zjn_sc00004.1.g05740.1.am.mk 340 CSHCAVQKTPQWRAGPEGAKTLCNACGVRFKSGRL 374
                                   *******************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.873334370IPR000679Zinc finger, GATA-type
SMARTSM004012.4E-17334388IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.09E-13337397No hitNo description
Gene3DG3DSA:3.30.50.101.2E-14338372IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.44E-14339396No hitNo description
PROSITE patternPS003440340365IPR000679Zinc finger, GATA-type
PfamPF003201.5E-16340374IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MVHQTLAPST ASASSPFVNA NDAATPAPAP CSSSHPSPRG SARPSYANHH SLMDGTMDAL  60
KSSAFSPEET AEDAAAANAA LVEREGFSIE DLLDMEVFGE PDTDSADQED APPPPATTAE  120
ETDEKSSPGK SQPSSIVTYE LPPPPPEMVD LPAHDVEEEL EWVSRVIDDS LSEVPPPPQP  180
LAMAAAQAAR SPLAHHCLPH DGPYRAVPPA PGPLRLLSTD VLVPVKAKRS KRSPSSAWYV  240
SGASLFLDST SSSSTATTSS SSSSSASFPS FLLDSPPFSC PDFEGYPRFL QPRRKNSKHS  300
KGGKQKPKKR GRKPKHAPQL TGAAAAAAAA SQVTQGDRRC SHCAVQKTPQ WRAGPEGAKT  360
LCNACGVRFK SGRLLPEYRP ACSPTFVSSI HSNSHRKVLE MRRKKEAGLV ATAAPAVASF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9471361e-86EU947136.1 Zea mays clone 328769 mRNA sequence.
GenBankEU9554321e-86EU955432.1 Zea mays clone 1531924 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001151060.11e-131uncharacterized protein LOC100284693
TrEMBLB6TWI71e-130B6TWI7_MAIZE; GATA zinc finger family protein
STRINGSi010126m1e-127(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141733108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.22e-38GATA transcription factor 5