PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00004.1.g05740.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | GATA | ||||||||
Protein Properties | Length: 420aa MW: 44353.5 Da PI: 7.3565 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 57.6 | 1.7e-18 | 340 | 374 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 Cs+C + kTp+WR gp+g ktLCnaCG+++++ +l Zjn_sc00004.1.g05740.1.am.mk 340 CSHCAVQKTPQWRAGPEGAKTLCNACGVRFKSGRL 374 *******************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50114 | 11.873 | 334 | 370 | IPR000679 | Zinc finger, GATA-type |
SMART | SM00401 | 2.4E-17 | 334 | 388 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 3.09E-13 | 337 | 397 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.2E-14 | 338 | 372 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 5.44E-14 | 339 | 396 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 340 | 365 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.5E-16 | 340 | 374 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 420 aa Download sequence Send to blast |
MVHQTLAPST ASASSPFVNA NDAATPAPAP CSSSHPSPRG SARPSYANHH SLMDGTMDAL 60 KSSAFSPEET AEDAAAANAA LVEREGFSIE DLLDMEVFGE PDTDSADQED APPPPATTAE 120 ETDEKSSPGK SQPSSIVTYE LPPPPPEMVD LPAHDVEEEL EWVSRVIDDS LSEVPPPPQP 180 LAMAAAQAAR SPLAHHCLPH DGPYRAVPPA PGPLRLLSTD VLVPVKAKRS KRSPSSAWYV 240 SGASLFLDST SSSSTATTSS SSSSSASFPS FLLDSPPFSC PDFEGYPRFL QPRRKNSKHS 300 KGGKQKPKKR GRKPKHAPQL TGAAAAAAAA SQVTQGDRRC SHCAVQKTPQ WRAGPEGAKT 360 LCNACGVRFK SGRLLPEYRP ACSPTFVSSI HSNSHRKVLE MRRKKEAGLV ATAAPAVASF |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU947136 | 1e-86 | EU947136.1 Zea mays clone 328769 mRNA sequence. | |||
GenBank | EU955432 | 1e-86 | EU955432.1 Zea mays clone 1531924 hypothetical protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001151060.1 | 1e-131 | uncharacterized protein LOC100284693 | ||||
TrEMBL | B6TWI7 | 1e-130 | B6TWI7_MAIZE; GATA zinc finger family protein | ||||
STRING | Si010126m | 1e-127 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1417 | 33 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66320.2 | 2e-38 | GATA transcription factor 5 |