PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g05620.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 327aa MW: 37384.8 Da PI: 6.9542

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g05620.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	110.1	2.5e-34	48	141	34	129
NAM 34 ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrap 114 k++++y++e ++ + +++++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k+ lvg++ktLvfykgrap Zjn_sc00004.1.g05620.1.am.mk 48 SKQAELYYAEAEKCK-IGTEDQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKPIYV-KNCLVGMRKTLVFYKGRAP 126 566778888888886.3334677************************************.999************ PP NAM 115 kgektdWvmheyrle 129 +g+k+dW+mheyrle Zjn_sc00004.1.g05620.1.am.mk 127 NGQKSDWIMHEYRLE 141 ***********85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.449	7	161	IPR003441	NAC domain
Pfam	PF02365	8.2E-16	62	140	IPR003441	NAC domain
SuperFamily	SSF101941	1.11E-37	66	161	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
LTRSVRVQFP FRLRESNSVL EETARVQGLA EIGVLTGGAR RPSADARSKQ AELYYAEAEK 60 CKIGTEDQNE WYFFSHKDKK YPTGTRTNRA TTAGFWKATG RDKPIYVKNC LVGMRKTLVF 120 YKGRAPNGQK SDWIMHEYRL ETSENGMPHE EGWVVCRVFR KRLATVHRMP SDAPYWFNDH 180 GGFMAPEPSS HHLQNAMVYQ RQPSYPCKVE LEYHHLLPQE HFLQLPQLES PKLPDLVGSE 240 HVASRYMEQE LQAEQVYLTA GHASGSDWRA LDKFVASQLI SNEDANSKEP GSYSNQVQVF 300 NQVEEKEEAL DYVSTSASCG GENDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-30	68	162	70	166	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-30	68	162	70	166	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-30	68	162	70	166	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-30	68	162	70	166	NO APICAL MERISTEM PROTEIN
3swm_A	7e-30	68	162	73	169	NAC domain-containing protein 19
3swm_B	7e-30	68	162	73	169	NAC domain-containing protein 19
3swm_C	7e-30	68	162	73	169	NAC domain-containing protein 19
3swm_D	7e-30	68	162	73	169	NAC domain-containing protein 19
3swp_A	7e-30	68	162	73	169	NAC domain-containing protein 19
3swp_B	7e-30	68	162	73	169	NAC domain-containing protein 19
3swp_C	7e-30	68	162	73	169	NAC domain-containing protein 19
3swp_D	7e-30	68	162	73	169	NAC domain-containing protein 19
4dul_A	6e-30	68	162	70	166	NAC domain-containing protein 19
4dul_B	6e-30	68	162	70	166	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002448236.1	1e-157	NAC domain-containing protein 7
Swissprot	Q9FWX2	4e-84	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	C5YCY6	1e-156	C5YCY6_SORBI; Uncharacterized protein
STRING	Sb06g023780.1	1e-156	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2370	38	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	2e-76	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]