PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00004.1.g05440.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 526aa MW: 57056.2 Da PI: 9.5227 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.7 | 1.1e-12 | 260 | 307 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g W++ Ed++l d + ++G g+W++ +++ g+ R +k+c++rw +yl Zjn_sc00004.1.g05440.1.am.mk 260 KGLWSPGEDQKLRDFIVRYGHGCWSALPAKAGLQRNGKSCRLRWINYL 307 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.3e-17 | 314 | 358 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g ++ eE+e +++++lG++ W+ Iar+++ gRt++++k++w++yl Zjn_sc00004.1.g05440.1.am.mk 314 GMFSREEEETVMNLHAKLGNK-WSHIARHLP-GRTDNEVKNYWNSYL 358 56999****************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.296 | 255 | 307 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.74E-27 | 258 | 354 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-9 | 259 | 309 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.7E-11 | 260 | 307 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.5E-19 | 261 | 314 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.73E-8 | 263 | 307 | No hit | No description |
PROSITE profile | PS51294 | 25.468 | 308 | 362 | IPR017930 | Myb domain |
SMART | SM00717 | 3.5E-14 | 312 | 360 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-15 | 314 | 358 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.3E-25 | 315 | 361 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.37E-12 | 316 | 358 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 526 aa Download sequence Send to blast |
MRVETKHPKQ VRAGSHRDVK PGGSRLPDHD PKFIGPDAMH SRRMCKLSSD SCAQNARKLT 60 MRARAARGRG AWPHGGDDDP GRPEAEADAA DPPLPLTPFW RFGAGQRLGS GPGSPCSCRS 120 PARETEPNQR GGDGARQRRN AVFAAHREKK RLRVFRFQQG FDSGAASIGG GHLVRRLPSP 180 HQISIQPDKL RLSYKALRAT SSRCPHANAD RHHSASAPPV SSLLLLDSTQ PELPSSSCRA 240 LRSRSMGCKA CQKPKVQCRK GLWSPGEDQK LRDFIVRYGH GCWSALPAKA GLQRNGKSCR 300 LRWINYLRPG LKHGMFSREE EETVMNLHAK LGNKWSHIAR HLPGRTDNEV KNYWNSYLKK 360 RVEGGQASKC AADSDVSGST NTSETSQERL NRPASSESSS PVESSSADDS SCLTVTEPVA 420 PAAAAALRPH APVLPRVMFA DWLDMDYGTN LMAPGLDHAG VFDVMNGRSP TQGAVQVDGP 480 CGAVDSLHGL DDGGVCWGFD AAADQMDVQG AGFCDLLSMS EFLGIN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 8e-25 | 260 | 363 | 7 | 109 | B-MYB |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP091592 | 1e-136 | FP091592.1 Phyllostachys edulis cDNA clone: bphylf055c23, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004976342.1 | 1e-162 | transcription factor LAF1 | ||||
TrEMBL | A0A1E5W123 | 1e-161 | A0A1E5W123_9POAL; Transcription factor LAF1 | ||||
TrEMBL | K3YDJ9 | 1e-161 | K3YDJ9_SETIT; Uncharacterized protein | ||||
STRING | Si012304m | 1e-162 | (Setaria italica) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1707 | 37 | 109 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 2e-53 | myb domain protein 19 |