PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Zjn_sc00004.1.g04420.1.am.mk

Organism

Zoysia japonica

Taxonomic ID

309978

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia

Family

NAC

Protein Properties

Length: 535aa MW: 59407.1 Da PI: 10.8839

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Zjn_sc00004.1.g04420.1.am.mk	genome	ZGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	156.8	9.4e-49	22	158	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.........kvkaeekewyfFskrdkkyatgk 72 lppGfrF P+deelv++yL kkv++++ ++ evd++ ePw+Lp ++k + +ewyfFs rd+kyatg+ Zjn_sc00004.1.g04420.1.am.mk 22 LPPGFRFYPSDEELVCHYLYKKVANERAAQ-GTLVEVDLHAREPWELPGepwpvlvyhAAKLTASEWYFFSFRDRKYATGS 101 79***********************776.78**********955999998764445778************ PP NAM 73 rknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 r+nratk+gyWkatgkd+ev s ++++vg++ktLvfy+grap+g+k+ W+mhe+rl Zjn_sc00004.1.g04420.1.am.mk 102 RTNRATKTGYWKATGKDREVRSPaTRAVVGMRKTLVFYQGRAPNGVKSCWIMHEFRL 158 ******************977788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-54	19	196	IPR003441	NAC domain
PROSITE profile	PS51005	55.3	22	196	IPR003441	NAC domain
Pfam	PF02365	6.7E-27	23	158	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 535 aa Download sequence Send to blast
MDRQADRGRQ RGMGLREIES TLPPGFRFYP SDEELVCHYL YKKVANERAA QGTLVEVDLH 60 AREPWELPGE PWPVLVYHAA KLTASEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRE 120 VRSPATRAVV GMRKTLVFYQ GRAPNGVKSC WIMHEFRLDS PHSPPKVTFR RQTDQLLDIR 180 PLHNTEDWVL CRVFQKRKDS EQEAAGSSRA VVPLDQPVLE ALTDHQTAGS SVGFAPPQDN 240 NALLSAAIWQ YGSVLDHQYP QEVSSSPMMT MTGLVGSRGV GDVCGFFYDA GFEETAVNIA 300 GVGFPQGPAL DSFPAWDGPL QPSASQFPHD FRRLPVPVAP TRPTGVRPRY RKATARTRPQ 360 ELGSLGARPD RDGPWRQRGR GGTSSARASV HSSTRKHRWT ARGPGRPEPP PRQRDNPGGP 420 SPSADTEYRD PRATVTRAGP RPRRIDRVKC AQRPVKAPRA RPPGCLQVLL PHSGLRACCQ 480 RRPSPAVAGG HDRPRSRFPP AARGESHRVV RALAPACQLV PAHRREKGTA HAGSL

Sequence ? help Back to Top

Protein Sequence Length: 535 aa Download sequence Send to blast

MDRQADRGRQ RGMGLREIES TLPPGFRFYP SDEELVCHYL YKKVANERAA QGTLVEVDLH  60
AREPWELPGE PWPVLVYHAA KLTASEWYFF SFRDRKYATG SRTNRATKTG YWKATGKDRE  120
VRSPATRAVV GMRKTLVFYQ GRAPNGVKSC WIMHEFRLDS PHSPPKVTFR RQTDQLLDIR  180
PLHNTEDWVL CRVFQKRKDS EQEAAGSSRA VVPLDQPVLE ALTDHQTAGS SVGFAPPQDN  240
NALLSAAIWQ YGSVLDHQYP QEVSSSPMMT MTGLVGSRGV GDVCGFFYDA GFEETAVNIA  300
GVGFPQGPAL DSFPAWDGPL QPSASQFPHD FRRLPVPVAP TRPTGVRPRY RKATARTRPQ  360
ELGSLGARPD RDGPWRQRGR GGTSSARASV HSSTRKHRWT ARGPGRPEPP PRQRDNPGGP  420
SPSADTEYRD PRATVTRAGP RPRRIDRVKC AQRPVKAPRA RPPGCLQVLL PHSGLRACCQ  480
RRPSPAVAGG HDRPRSRFPP AARGESHRVV RALAPACQLV PAHRREKGTA HAGSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	4e-43	13	202	1	174	Stress-induced transcription factor NAC1
Search in ModeBase

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL606659	1e-117	AL606659.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0070J16, complete sequence.
GenBank	AL731630	1e-117	AL731630.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0072M01, complete sequence.
GenBank	AP014960	1e-117	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CP012612	1e-117	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025824637.1	1e-133	protein CUP-SHAPED COTYLEDON 1-like
TrEMBL	A0A2T7CXR4	1e-132	A0A2T7CXR4_9POAL; Uncharacterized protein
STRING	Pavir.Ga01251.1.p	1e-132	(Panicum virgatum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP697	38	166

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28530.1	1e-70	NAC domain containing protein 74