PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00004.1.g04060.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | MYB | ||||||||
Protein Properties | Length: 408aa MW: 45097.9 Da PI: 9.7762 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.2 | 9.2e-19 | 148 | 195 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WTt+Ed+ll++ v+q+G g+W+++ ++ g++R++k+c++rw +yl Zjn_sc00004.1.g04060.1.am.mk 148 KGPWTTQEDKLLIEHVRQHGEGRWNSVCKHTGLKRSGKSCRLRWVNYL 195 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 53.6 | 5.1e-17 | 201 | 245 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++ Zjn_sc00004.1.g04060.1.am.mk 201 RGKITPQEERIIVQLHALWGNR-WSTIARSLP-GRTDNEIKNYWRTH 245 8999******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.015 | 143 | 195 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.24E-29 | 146 | 242 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-16 | 147 | 197 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-17 | 148 | 195 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.8E-23 | 149 | 202 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.33E-12 | 150 | 195 | No hit | No description |
PROSITE profile | PS51294 | 26.063 | 196 | 250 | IPR017930 | Myb domain |
SMART | SM00717 | 2.8E-16 | 200 | 248 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 201 | 245 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.2E-24 | 203 | 248 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.83E-11 | 205 | 246 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 408 aa Download sequence Send to blast |
LACGREKQGR EDLFNRVPAP AGRTFVALMM RGVAIRLDRQ RTYGLANRRG GRIGAGACAL 60 YARVGYVEAR VRDVPVLRSR SPSGNFMSRD ARTGTSGDSD HLTRLRTCPS DQDTRYRSRA 120 SMREPRCAAI TMEGQLSWGR QEVDGWRKGP WTTQEDKLLI EHVRQHGEGR WNSVCKHTGL 180 KRSGKSCRLR WVNYLRPDLK RGKITPQEER IIVQLHALWG NRWSTIARSL PGRTDNEIKN 240 YWRTHFKKGK PSKNIEIARA RFLKQRREMQ CPQQQQQVQL VNKNEDTELH ATRTAGTVKV 300 DADRGSAVVD NACPATTTAA AAAAADQSGH QQAADLIIHD VIMDFMCPMS CSLLLHGAGA 360 HQGAAGAGSC CGSTSEEYGS SEEDGATWGS LWNLEDIVVD GGGGACSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 2e-27 | 148 | 248 | 27 | 126 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK109620 | 1e-123 | AK109620.1 Oryza sativa Japonica Group cDNA clone:002-138-A05, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025824833.1 | 1e-119 | transcription factor MYB8-like isoform X2 | ||||
TrEMBL | A0A3L6PVQ3 | 1e-122 | A0A3L6PVQ3_PANMI; Transcription repressor MYB6-like | ||||
STRING | Pavir.Ga01308.1.p | 1e-117 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3243 | 35 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 4e-62 | myb domain protein 79 |