PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g03470.1.sm.mkhc
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family CO-like
Protein Properties Length: 319aa    MW: 34187.9 Da    PI: 5.0242
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g03470.1.sm.mkhcgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.41.5e-081755338
                        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                                    +r C+ ++ + ++++C+ +  +lC+ C    H g    H 
  Zjn_sc00004.1.g03470.1.sm.mkhc 17 ARPCDACGTEAARFYCRADAAFLCAGCDARAH-GpasrHA 55
                                    689*************************9999.5455575 PP
2zf-B_box23.98.4e-0857101341
                        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                                      + C+ +e+ +++  C+ +   lC++C   +H+       H++ p
  Zjn_sc00004.1.g03470.1.sm.mkhc  57 VWLCEVCEHAPASVTCRADAAALCASCDADIHSAnplarrHERLP 101
                                     679*****************************6688888898877 PP
3CCT69.58.7e-24230273144
                             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                                     Rea+l+RY+eKrk+R+FeK+irY+sRKa+Ae+RpR+KGrF+k++
  Zjn_sc00004.1.g03470.1.sm.mkhc 230 REARLMRYREKRKSRRFEKTIRYASRKAYAETRPRIKGRFAKRT 273
                                     9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6511559IPR000315B-box-type zinc finger
SMARTSM003365.3E-101559IPR000315B-box-type zinc finger
PfamPF006438.3E-71754IPR000315B-box-type zinc finger
CDDcd000213.42E-81859No hitNo description
PROSITE profilePS5011910.60855102IPR000315B-box-type zinc finger
PfamPF006433.4E-657102IPR000315B-box-type zinc finger
CDDcd000212.33E-858102No hitNo description
SMARTSM003362.3E-960102IPR000315B-box-type zinc finger
PfamPF062038.9E-18230272IPR010402CCT domain
PROSITE profilePS5101716.876230272IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MASDEKSVGG SYWGLNARPC DACGTEAARF YCRADAAFLC AGCDARAHGP ASRHARVWLC  60
EVCEHAPASV TCRADAAALC ASCDADIHSA NPLARRHERL PVAPFYGALA DAPKPFAASS  120
AVADDDRSNE AEAASWLLPE PEHEQNDGPS ADVFFADSDT YLDLEFARSM DDIKAIGVQN  180
CPPDMDLTGA KLFYPDHSLN HSVSSSEAAV VPDAAAGAAP APVVSRGWER EARLMRYREK  240
RKSRRFEKTI RYASRKAYAE TRPRIKGRFA KRTSAGSGAE AEEDRDEEMY SSAAAAVAAL  300
MTPAAGDADY GIDGVVPTF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025825843.11e-173zinc finger protein CONSTANS-LIKE 3-like
TrEMBLA0A2S3I8051e-171A0A2S3I805_9POAL; Uncharacterized protein
STRINGAC233888.1_FGP0021e-166(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21913272
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.13e-54CONSTANS-like 5