PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00004.1.g02760.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family ERF
Protein Properties Length: 716aa    MW: 76322 Da    PI: 11.9451
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00004.1.g02760.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.93.8e-16431480255
                           AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                   +y+GVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  Zjn_sc00004.1.g02760.1.am.mk 431 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 480
                                   69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.3E-30430489IPR001471AP2/ERF domain
PfamPF008471.1E-9431480IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-21431490IPR016177DNA-binding domain
SMARTSM003802.8E-37431494IPR001471AP2/ERF domain
PROSITE profilePS5103222.972431488IPR001471AP2/ERF domain
CDDcd000183.73E-25431490No hitNo description
PRINTSPR003674.7E-11432443IPR001471AP2/ERF domain
PRINTSPR003674.7E-11470490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MRASLPNRRA ATVQAPPHKA RSKQTKRTRT HPHRPNVWAP VPDPFVRGPG RLDEETRQPD  60
RLRSPWATAK APQRWAAAPH RAEADNHGVA LGPIAFAATA IKRAAPTWAV AEPATSLPPP  120
ARVGGGYMTC PARPRQSFPA RLGHCSARRH GVTSGVAADM GAWPGLGARG CLVVGPSSAR  180
GSLSRRRECG GGGKMPDAVH ARKLARRHGV TSCSTVVVIS PRTWSPARIS LARLVPIACT  240
VYVTLNGKYR QTQLRPPGNT GAGDSVHFSR RRVYTCTQPC ATELELKNNF IHGDTDKLVL  300
VLSDRSRPRP SLSRGHPRTA PPPTRPGRPA KNPALITRAP THSGHANPPP GRAPNPLLFI  360
HREETTASAA AAAHLHAAAA LPNPGMERDA TALYPAPQPP QSTAAVGAAA AAAAAAAGGN  420
ARGGGGGGGR QYRGVRMRKW GKWVAEIREP NKRSRIWLGS YSTAVAAARA YDTAVFYLRG  480
RSARLNFPDQ LDGAAVADRP EDRKEGGGLT AAAIRKKAAE VGARVDALHS GSGVVHPPAL  540
PLSHRRRAKN PDLNREPTPD TSDDELEKPE VSCRSLIWPE ATPTATARSS RVRVKCVALA  600
LMCPNYEGFS FSISRSCPRQ TRSAARVTCK AMIKMTMVAS VSCTTATGAS LQPRGNRRRA  660
RRATGGFDAN AERGVDPPGW GRFARVAVGM AWTTGRPAPC GHRRRRTGLL LVVVGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-14429492367ATERF1
3gcc_A1e-14429492367ATERF1
5wx9_A5e-144314921476Ethylene-responsive transcription factor ERF096
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421429RGGGGGGGR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9556821e-102EU955682.1 Zea mays clone 1542257 dehydration responsive element binding protein mRNA, complete cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.19e-31DREB and EAR motif protein 3