PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00004.1.g01940.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | ERF | ||||||||
Protein Properties | Length: 164aa MW: 17891.2 Da PI: 6.7861 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.4 | 8.4e-19 | 7 | 56 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+Wv+eIr+p +r++lg+f tae+Aa+a+++a++ + g Zjn_sc00004.1.g01940.1.am.mk 7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 56 69******9.**********8.....334**********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.27E-30 | 6 | 64 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.6E-33 | 7 | 64 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-37 | 7 | 70 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-20 | 7 | 64 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.4E-11 | 7 | 55 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.692 | 7 | 64 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 8 | 19 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.5E-11 | 30 | 46 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MARSQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARIMCGPRVR 60 TNFPSGDAAS SFLSPALVAK LHRFNLASVQ QARGDKADAC MTTAPAVLPR EAMPAGSASM 120 GIAPAPSAAG PGWSGGEGVF LEEQYVDQMI EELLDSNFAM ETSY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-16 | 6 | 64 | 4 | 63 | ATERF1 |
3gcc_A | 3e-16 | 6 | 64 | 4 | 63 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU968112 | 6e-77 | EU968112.1 Zea mays clone 314589 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025813619.1 | 1e-81 | ethylene-responsive transcription factor ERF003-like | ||||
Swissprot | Q94AW5 | 6e-47 | ERF03_ARATH; Ethylene-responsive transcription factor ERF003 | ||||
TrEMBL | A0A2S3HL98 | 3e-80 | A0A2S3HL98_9POAL; Uncharacterized protein | ||||
TrEMBL | A0A2T7E242 | 3e-80 | A0A2T7E242_9POAL; Uncharacterized protein | ||||
STRING | Pavir.Da02059.1.p | 2e-81 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1418 | 35 | 118 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25190.1 | 2e-36 | ERF family protein |
Publications ? help Back to Top | |||
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